A Tourist element in the 5'-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types

Molecular and General Genetics

Volumn 262, Issue 3, 1999, Pages 493-500

  Iwamoto, M ^a   Nagashima, H ^a,b   Nagamine, T ^a   Higo, H ^a   Higo, K ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b TOYOHASHI UNIVERSITY OF TECHNOLOGY   (Japan)

Author keywords

Catalase; Evolution; Oryza; Rice; Tourist

Indexed keywords

CATALASE; PLANT DNA;

ARTICLE; DNA FLANKING REGION; GENOME; GEOGRAPHIC DISTRIBUTION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RICE; SEQUENCE ANALYSIS; TRANSPOSON;

BASE SEQUENCE; CATALASE; DNA TRANSPOSABLE ELEMENTS; DNA, PLANT; EVOLUTION, MOLECULAR; GENOME, PLANT; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY;

EID: 0032694962     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380051110     Document Type: Article

References (19)

1. Abler ML, Scandalios JG (1993) Isolation and characterization of a genomic sequence encoding the maize Cat3 catalase gene. Plant Mol Biol 22:1031-1038
2. Aggarwal RK, Brar DS, Khush GS (1997) Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization. Mol Gen Genet 254:1-12
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
4. Bureau TE, Wessler SR (1992) Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4:1283-1294
5. Bureau TE, Wessler SR (1994) Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses. Proc Natl Acad Sci USA 91:1411-1415
6. Chen M, Bennetzen JL (1996) Sequence composition and organization in the Sh2/A1-homologous region of rice. Plant Mol Biol 32:999-1001
7. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
8. Felsenstein J (1988) PHYLIP: phylogeny inference package. Cladistics 5:355-356
9. Higo K, Higo H (1996) Cloning and characterization of the rice Cat A catalase gene, a homologue of the maize Cat3 gene. Plant Mol Biol 30:505-521
10. Iwamoto M, Maekawa M, Saito A, Higo H, Higo K (1998) Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots. Theor Appl Genet 97:9-19
11. Iwamoto M, Nagashima H, Nagamine T, Higo H, Higo K (1999) p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA genome Oryza and related species. Theor Appl Genet 98:853-861
12. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
13. Song WY, Pi LY, Wang GL, Gardner J, Holsten T, Ronald PC (1997) Evolution of the rice Xa21 disease resistance gene family. Plant Cell 9:1279-1287
14. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
15. Umeda M, Ohtsubo H, Ohtsubo E (1991) Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns. Jpn J Genet 66:569-586
16. Vaughan DA (1989) The genus Oryza L.: current status of taxonomy. IRRI Res Paper Ser 138
17. Vaughan DA (1994) The wild relatives of rice: a genetic resources handbook. International Rice Research Institute, Manila, Philippines
18. Wang ZY, Second G, Tanksley SD (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor Appl Genet 83:565-581
19. Zhang Q, Kochert G (1998) Independent amplification of two classes of Tourists in some Oryza species. Genetica 101:145-152