Development and characterization of polymorphic microsatellite markers in taro (Colocasia esculenta)

Genome

Volumn 45, Issue 5, 2002, Pages 823-832

  Mace, Emma S ^a   Godwin, Ian D ^a  

^a INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (India)

Author keywords

Colocasia esculenta; Germplasm characterization; Microsatellite enriched genomic library; Simple sequence repeats

Indexed keywords

ALLELES; ASIA, SOUTHEASTERN; BASE SEQUENCE; CLONING, MOLECULAR; COLOCASIA; DINUCLEOTIDE REPEATS; DNA PRIMERS; DNA, PLANT; GENOME, PLANT; GENOMIC LIBRARY; MICROSATELLITE REPEATS; PACIFIC ISLANDS; POLYMORPHISM, GENETIC; TRINUCLEOTIDE REPEATS;

COLOCASIA ESCULENTA; EMBRYOPHYTA; OCEANIA;

EID: 0036433918     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g02-045     Document Type: Article

References (45)

1. Ashkenazi, V., Chani, E., Lavi, U., Levy, D., Hillel, J., and Veilleux, R.E. 2001. Development of microsatellite markers in potato and their use in phylogenetic and fingerprinting analyses. Genome, 44: 50-62.
2. Boehringer Mannheim. 1995. The DIG System User's Guide for Filter Hybridization. Boehringer Mannheim GmbH, Biochemica, Mannheim, Germany.
3. Bowers, J., Boursiquot, J., This, P., Chu, K., Johansson, H., and Meredith, C. 1999. Historical genetics: The parentage of Chardonnay, Gamay, and other wine grapes of northeastern France. Science (Washington, D.C.), 285: 1562-1565.
4. Butcher, P.A., Decroocq, S., Gray, Y., and Moran, G.F. 2000. Development, inheritance and cross-species amplification of microsatellite markers from Acacia mangium. Theor. Appl. Genet. 101: 1282-1290.
5. Buteler, M.I., Jarret, R.L., and LaBonte, D.R. 1999. Sequence characterisation of microsatellites in diploid and polyploid Ipomoea. Theor. Appl. Genet. 99: 123-132.
6. Cardle, L., Ramsay, L., Milbourne, D., Macaulay, M., Marshall, D., and Waugh, R. 2000. Computational and experimental characterisation of physically clustered simple sequence repeats in plants. Genetics, 156: 847-854.
7. Chavarriaga-Aguirre, P., Maya, M.M., Bonierbale, M.W., Kresovich, S., Fregene, M.A., Tohme, J., and Kochert, G. 1998. Microsatellites in Cassava (Manihot esculenta Crantz): Discovery, inheritance and variability. Theor. Appl. Genet. 97: 493-501.
8. Cifarelli, R.A., Gallitelli, M., and Cellini, F. 1995. Random amplified hybridization microsatellites (RAHM): Isolation of a new class of microsatellite-containing clones. Nucleic Acids Res. 23: 3802-3803.
9. Condit, R., and Hubbell, S.P. 1991. Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome, 34: 66-71.
10. Davierwala, A.P., Ramakrishna, W., Ranjekar, P.K., and Gupta, V.S. 2000. Sequence variations at a complex microsatellite locus in rice and its conservation in cereals. Theor. Appl. Genet. 101: 1291-1298.
11. Edwards, K.J., Barker, J.H.A., Daly, A., Jones, C., and Karp, A. 1996. Microsatellite libraries enriched for several microsatellite sequences in plants. BioTechniques, 20: 758-760.
12. FAOSTAT, 2000. FAO Statistical Database: Agricultural Production of Primary Crops. Available from http://apps.fao.org/default.htm. Accessed July 2001.
13. Fisher, P.J., Richardson, T.E., and Gardner, R.C. 1998. Characteristics of single- and multi-copy microsatellites from Pinus radiata. Theor. Appl. Genet. 96: 969-979.
14. Godwin, I.G., Mace, E.S., and Nurzuhairawaity. 2001. Genotyping Pacific island taro (Colocasia esculenta (L.) Schott) germplasm. In Plant Genotyping - The DNA Fingerprinting of Plants. Edited by R. Henry. CAB International, Oxon, U.K. pp. 109-128.
15. Gupta, P.K., and Varshney, R.K. 2000. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica, 113: 163-185.
16. Irwin, S.V., Kaufusi, P., Banks, K., de la Peña, R., and Cho, J.J. 1998. Molecular characterisation of taro (Colocasia esculenta) using RAPD markers. Euphytica, 99: 183-189.
17. Ito, T., Smith, C.L., and Cantor, C.R. 1992. Sequence-specific DNA purification by triplex affinity capture. Proc. Natl. Acad. Sci. U.S.A. 89: 495-498.
18. Karagyozov, L., Kalcheva, I.D., and Chapman, V.M. 1993. Construction of random small-insert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Res. 21: 3911-3912.
19. Kijas, J.M.H., Fowler, J.C.S., Garbett, C.A., and Thomas, M.R. 1994. Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. BioTechniques, 16: 657-662.
20. Kuruvilla, K.M., and Singh, A. 1981. Karyotypic and electrophoretic studies on taro and its origins. Euphytica, 30: 405-412.
21. Lebot, V., and Aradhya, K.M. 1991. Isozyme variation in taro (Colocasia esculenta (L.) Schott.) in Asia and Oceania. Euphytica, 56: 55-66.
22. Lopes, M.S., Sefc, K.M., Eiras Dias, E., Steinkellner, H., Laimer da Câmara Machado, M., and da Câmara Machado, A. 1999. The use of microsatellites for germplasm management in a Portuguese grapevine collection. Theor. Appl. Genet. 99: 733-739.
23. Macaulay, M., Ramsay, L., Powell, W., and Waugh, R. 2001. A representative, highly informative "genotyping set" of barley SSRs. Theor. Appl. Genet. 102: 801-809.
24. Maguire, T.L., Edwards, K.J., Saenger, P., and Henry, R. 2000. Characterisation and analysis of microsatellite loci in mangrove species, Avicennia marina (Forsk.) Vierh. (Avicenniaceae). Theor. Appl. Genet. 101: 279-285.
25. Mba, R.E.C., Stephenson, P., Edwards, K., Melzer, S., Nkumbira, J., Gullberg, U., Apel, K., Gale, M., Tohme, J., and Fregene, M. 2001. Simple sequence repeat (SSR) markers survey of the cassava (Manihot esculenta Crantz) genome: Towards an SSR-based molecular genetic map of cassava. Theor. Appl. Genet. 102: 21-31.
26. Morgante, M., and Olivieri, A.M. 1993. PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182.
27. Plucknett, D.L. 1976. Edible aroids: Alocasia, Colocasia, Cyrtosperma, Xanthosoma. In Evolution of Crop Plants. Edited by N.W. Simmonds. Longman Press, London, U.K. pp. 10-12.
28. Powell, W., Machray, G.C., and Provan, J. 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222.
29. Prasad, M., Varshney, R.K., Roy, J.K., Balyan, H.S., and Gupta, P.K. 2000. The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat. Theor. Appl. Genet. 100: 584-592.
30. Purseglove, J.K. 1972. Tropical crops. Monocotyledons I. Longman Press, London, U.K.
31. Rallo, P., Dorado, G., and Martín, A. 2000. Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.). Theor. Appl. Genet. 101: 984-989.
32. Rivera, R., Edwards, K.J., Barker, J.H.A., Arnold, G.M., Ayad, G., Hodgkin, T., and Karp, A. 1999. Isolation and characterization of polymorphic microsatellites in Cocos nucifera L. Genome, 42: 668-675.
33. Roa, A.C., Chavarriaga-Aguirre, P., Duque, M.C., Maya, M.M., Bonierbale, M.W., Iglesias, C., and Tohme, J. 2000. Cross-species amplification of cassava (Manihot esculenta) (Euphorbiaceae) microsatellites: Allelic polymorphism and degree of relationship. Am. J. Bot. 87: 1647-1655.
34. Roder, M.S., Plaschke, J., Konig, S.U., Borner, A., Sorells, M.E., Tanksley, S.D., and Canal, M.W. 1995. Abundance, variability and chromosomal location of microsatellites in wheat. Mol. Gen. Genet. 246: 327-333.
35. Rossetto, M., McLauchlan, A., Harriss, F.C.L., Henry, R.J., Baverstck. P.R., Lee, L.S., Maguire, T.L., and Edwards, K.J. 1999. Abundance and polymorphism of microsatellite markers in tea tree (Melaleuca alternifolia, Myrtaceae). Theor. Appl. Genet. 98: 1091-1098.
36. Smulders, M.J.M., Bredemeijer, G., Rus-Kortekaas, W., Arens, P., and Vosman, B. 1997. Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor. Appl. Genet. 97: 264-272.
37. Struss, D., and Plieske, J. 1998. The use of microsatellite markers for detection of genetic diversity in barley populations. Theor. Appl. Genet. 97: 308-315.
38. Sun, G.-L., Salomon, B., and Bothmer, R.V. 1998. Characterisation and analysis of microsatellite loci in Elymus caninus (Triticeae: Poaceae). Theor. Appl. Genet. 96: 676-682.
39. TANSAO. 1999. Taro Network for South East Asia and Oceania: Evaluation and Breeding for Rainfed Cropping Systems in South East Asia and Oceania. Annual Report 1999. Port Vila, Vanuatu.
40. Taramino, G., and Tingey, S. 1996. Simple sequence repeats for germplasm analysis and mapping in maize. Genome, 39: 277-287.
41. Terauchi, R., and Konuma, A. 1994. Microsatellite polymorphism in Dioscorea tokoro, a wild yam species. Genome, 37: 794-801.
42. van de Wiel, C., Arens, P., and Vosman, B. 1999. Microsatellite retrieval in lettuce (Lactuca sativa L.). Genome, 42: 139-149.
43. van der Schoot, J., Posṕšková, M., Vosman, B., and Smulders, M.J.M. 2000. Development and characterisation of microsatellite markers in black poplar (Populus nigra L.). Theor. Appl. Genet. 101: 317-322.
44. n polymorphisms. Genomics, 7: 524-530.
45. Weising, K., Winter, P., Huttel, B., and Kahl, G. 1998. Microsatellite markers for molecular breeding. J. Crop Prod. 1: 113-143.