Patterns of genetic variation in Pinus chiapensis, a threatened Mexican pine, detected by RAPD and mitochondrial DNA RFLP markers

Heredity

Volumn 89, Issue 3, 2002, Pages 191-198

  Newton, Adrian C ^a   Allnutt, T R ^a,d   Dvorak, W S ^b   Del Castillo, R F ^c   Ennos, R A ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

^d JOHN INNES CENTRE   (United Kingdom)

Author keywords

Conservation; Genetic variation; Pinus strobus var. chiapensis; White pine

Indexed keywords

GENETIC MARKER; GENETIC VARIATION; TREE;

DNA, MITOCHONDRIAL; GUATEMALA; MEXICO; PHYLOGENY; PINUS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; VARIATION (GENETICS);

GUATEMALA; MEXICO;

CONIFEROPHYTA; EMBRYOPHYTA; PINACEAE; PINUS CHIAPENSIS; PINUS STROBUS;

EID: 0036385004     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800113     Document Type: Article

References (40)

1. Aagaard JE, Vollmer SS, Sorensen FC, Strauss SH (1995). Mitochondrial DNA products among RAPD profiles are frequent and strongly differentiated between races of Douglas-fir. Mol Ecol, 4: 441-447.
2. Allnutt TR, Newton AC, Lara A, Premoli A, Armesto JJ, Vergara R et al (1999). Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. Mol Ecol, 8: 975-987
3. Allnutt TR, Courtis JR, Gardner M, Newton AC (2001). Genetic variation in wild Chilean and cultivated British populations of Podocarpus salignus D. Don (Podocarpaceae). Edinb J Bot 58: 459-473.
4. Allnutt TR, Newton AC, Premoli A, Lara A (2002). Genetic variation in the threatened conifer, Pilgerodendron uviferum. Biol Conserv In press.
5. Bekessy SA, Allnutt TR, Premoli AC, Lara A, Ennos RA, Burgman MA et al (2002). Genetic variation in the vulnerable and endemic Monkey Puzzle tree, detected using RAPD. Heredity 88: 243-249.
6. Chalmers KJ, Waugh R, Sprent JI, Simons AJ, Powell W (1992). Detection of genetic variation between and within populations of Gliricidia sepium and G. maculata using RAPD markers. Heredity 69: 465-472.
7. Cornelius J (1994). Heritabilities and additive genetic coefficients of variation in forest trees. Can J For Res 24: 372-379.
8. Del Castillo RF, Acosta S (2001). Ethnobotanical notes on Pinus strobus var. chiapensis. Boletin Sociedad Botánica de Mexico (In press).
9. Doyle JJ, Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
10. Dvorak WS, Brouard J (1987). An evaluation of Pinus chiapensis as a Commercial plantation species for the tropics and subtropics. Comm For Rev 66: 165-176.
11. Dvorak WS, Donahue JK (1992). CAMCORE Cooperative Research Review 1980-1992. College of Forest Resources, North Carolina State University: USA, 93 pp.
12. Dvorak WS, Donahue JK, Vasquez JA (1996). Provenance and progeny results for the tropical white pine, Pinus chiapensis, at five and eight years of age. New For 12: 125-140.
13. Excoffier L, Smouse PE, Quattro JM (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
14. Ehtisham-ul-Haq, M, Allnutt TR, Smoth-Ramirez C, Gardner M, Armesto JJ, Newton AC (2001). Patterns of genetic variation in in- and ex-situ populations of the threatened vine Berberidopsis corallina, detected using RAPD markers. Ann Bot 87: 813-821.
15. Farjon A, Page CN (1999). Conifers - status survey and conservation action plan. IUCN/SSC Conifer Specialist Group: Cambridge, UK.
16. Felsenstein J (1993). PHYLIP (Phylogeny Inference Package). Department of Genetics, University of Washington, Seattle.
17. Gillies ACM, Cornelius JP, Newton AC, Navarro C, Hernández M, Wilson J (1997). Genetic variation in Costa Rican populations of the tropical timber tree Cedrela odorata L. (Spanish cedar), assessed using RAPDs. Mol Ecol 6: 1133-1145.
18. Gillies ACM, Navarro C, Lowe AJ, Newton AC, Hernández M, Wilson J et al (1999). Genetic diversity in Mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity 83: 722-732.
19. Hamrick JL, Godt MJW (1990). Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant Population Genetics, Breeding and Genetic Resources, Sinauer Associates: Sunderland, Mass. pp. 43-63.
20. Hamrick JL, Godt MJW, Sherman-Broyles SL (1992). Factors influencing levels of genetic diversity in woody plant species. New For 6: 95-124.
21. Heine K, Ohngemach D (1976). Die Pleistozän/Holozän-Grenze in Mexiko. Münstersche Forschungen zur Geologie und Paläonontologie 38/39: 229-251.
22. Isabel N, Beaulieu J, Bousquet J (1995). Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce. Proc Nat Acad Sci USA 92: 6369-6373.
23. Ledig FT (1998). Genetic variation in Pinus. In: Richardson DM (ed) Ecology and Biogeography of Pinus, Cambridge University Press: Cambridge. pp 251-280.
24. Ledig FT, Conkle MT, Bermejo-Velázquez B, Eguiluz-Piedra T, Hodgskiss PD, Johnson DR et al (1999). Evidence for an extreme bottleneck in a rare Mexican endemic pinyon: genetic diversity, disequilibrium, and the mating system of Pinus maximartinezii. Evolution 53: 91-99.
25. Ledig FT, Jacob-Cervantes V, Hodgskiss PD, Eguilez-Piedra T (1997). Recent evolution and divergence among populations of a rare Mexican endemic, Chihuahua spruce, following Holocene climatic warming. Evolution 51: 1815-1827.
26. Lewontin RC (1972). The apportionment of human diversity. Evol Biol 6: 381-398.
27. Liston A, Robinson WA, Piñero D, Alvarez-Buylla ER (1999). Phylogenetics of Pinus (Pinaceae) based on nuclear ribosomal DNA internal transcribed spacer region sequences. Mol Phylogenet Evol 11: 95-109.
28. Lynch M, Milligan BG (1994). Analysis of population genetic structure with RAPD markers. Mol Ecol 3: 91-99.
29. Newton AC, Allnutt T, Gillies ACM, Lowe A, Ennos RA (1999). Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends Ecol Evol 14: 140-145.
30. Nybom H, Bartish IV (2000). Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect Plant Ecol Evol Systemat 3/2: 93-114.
31. Perry JP, Graham A, Richardson DM (1998). The history of pines in Mexico and Central America. In: Richardson DM (ed) Ecology and Biogeography of Pinus, Cambridge University Press: Cambridge. pp 137-149.
32. Price RA, Liston AL, Strauss SH (1998). Phylogeny and systematics of Pinus. In: Richardson DM (ed) Ecology and Biogeography of Pinus, Cambridge University Press: Cambridge. pp 49-68.
33. Richardson DM, Rundel PW (1998). Ecology and biogeography of Pinus: an introduction. In: Richardson DM (ed) Ecology and Biogeography of Pinus, Cambridge University Press: Cambridge, pp 3-46.
34. Sambrook J, Fritsch EF, Maniatis T (1989). Molecular Cloning - a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY.
35. Sinclair WT, Morman JD, Ennos RA (1998). Multiple origins for Scots pine (Pinus sylvestris L.) in Scotland: evidence from mitochondrial DNA variation. Heredity 80: 233-240.
36. Sneath PHA, Sokal RR (1973). Numerical Taxonomy. W. H. Freeman: San Francisco.
37. Wright S (1951). The genetical structure of populations. Annals Eugenics 15: 323-354.
38. Wright JA, Marin AM, Dvorak WS (1996). Conservation and use of the Pinus chiapensis genetic resource in Colombia. For Ecol Manag 88: 283-288.
39. Yeh FC, Chong DKX, Yang R-C (1995). RAPD variation within and among natural populations of trembling aspen (Populus tremuloides Michx.) from Alberta. J Hered 86: 454-460.
40. Zamora-Serrano C, Velasco-Fiscal V (1977). Pinus strobus var. chiapensis, una especie en peligro de extincion en el estado de Chiapas. Ciencia Forestal 2: 3-23.