Biological microchips with hydrogel-immobilized nucleic acids, proteins, and other compounds: Properties and applications in genomics

Molecular Biology

Volumn 36, Issue 4, 2002, Pages 437-455

  Barsky, V E ^a   Kolchinsky, A M ^b   Lysov, Yu P ^a   Mirzabekov, A D ^a  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b Health Front Line Ltd   (United States)

Author keywords

Biological microchips; Genomics; Nucleic acids; Proteins

Indexed keywords

ANTHRAX TOXIN; DNA FRAGMENT; LIGAND; MU OPIATE RECEPTOR; NUCLEIC ACID; OLIGONUCLEOTIDE; OLIGOSACCHARIDE; PENICILLIN G; PRIMER DNA; PROTEIN; RIFAMPICIN; RNA;

ANALYTIC METHOD; ANTIBIOTIC RESISTANCE; BACILLUS; BACTERIUM DETECTION; BETA THALASSEMIA; CHEMICAL REACTION; CHROMOSOME REARRANGEMENT; COMPUTER PROGRAM; DIFFUSION; DNA BINDING; DNA DENATURATION; DNA DETERMINATION; DNA MICROARRAY; ENZYME MECHANISM; GENE AMPLIFICATION; GENE EXPRESSION; GENE FUNCTION; GENE MUTATION; GENETIC ENGINEERING; GENOMICS; HUMAN; HYDROGEL; INFORMATION PROCESSING; LEUKEMIA; LIGAND BINDING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR INTERACTION; NONHUMAN; NUCLEIC ACID IMMOBILIZATION; NUCLEOTIDE SEQUENCE; PENICILLIN RESISTANCE; POLYMERASE CHAIN REACTION; PROTEIN IMMOBILIZATION; REVIEW; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; THERMODYNAMICS; THERMOPHILIC BACTERIUM; VIRUS DETECTION;

ANTHRAX; BACTERIA (MICROORGANISMS);

EID: 0036346820     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1019804005711     Document Type: Review

References (39)

1. Cortese, J.D., Scientist, 2000, vol. 14, pp. 25-28.
2. Lysov, Yu.P., Florentiev, V.L., Khorlin, A.A., Khrapko, K.R., Shick, V.V., and Mirzabekov, A.D., Dokl. Akad. Nauk, 1988, vol. 303, pp. 1508-1511.
3. Khrapko, K., Lysov, Y., Khorlin, A., Shick, V., Florentiev, V., and Mirzabekov, A., FEBS Lett., 1989, vol. 256, pp. 118-122.
4. Yershov, G., Barsky, V., Belgovskiy, A., Kirillov, E., Kreindlin, E., Ivanov, I., Parinov, S., Guschin, D., Drobyshev, A., Dubiley, S., and Mirzabekov, A., Proc. Natl. Acad. Sci. USA, 1996, vol. 93, pp. 4913-4918.
5. Vasiliskov, A.V., Timofeev, E.N., Surzhikov, S.A., Drobyshev, A.L., Shick, V.V., and Mirzabekov, A.D., BioTechniques, 1999, vol. 27, pp. 592-606.
6. Arenkov, P., Kukhtin, A., Gemmell, A., Chupeeva, V., and Mirzabekov, A., Anal. Biochem., 2000, vol. 278, pp. 123-131.
7. Timofeev, E., Kochetkova, S., Mirzabekov, A., and Florentiev, V., Nucleic Acids Res., 1996, vol. 24, pp. 3142-3148.
8. LaForge, K.S., Shick, V., Spangler, R., Proudnikov, D., Yuferov, V., Lysov, Yu., Mirzabekov, A., and Kreek, M.J., Am. J. Hum. Genet., 2000, vol. 96, pp. 604-615.
9. Bavykin, S., Mikhaylovich, V., Zakharyev, V., Lysov, Yu., Kelly, J., Flax, J., Jackman, J., Stahl, D., and Mirzabekov, A., Appl. Environ. Microbiol., 2002 (in press).
10. Mikhailovich, V.M., Lapa, S.A., Gryadunov, D.A., Strizhkov, B.N., Sobolev, A.Yu., and Mirzabekov, A.D., Byull. Eksp. Biol. Med., 2001, vol. 131, pp. 112-117.
11. Mikhailovich, V., Lapa, S., Gryadunov, D., Sobolev, A., Strizhkov, B., Chemyh, N., Skotnikova, O., Irtuganova, O., Moroz, A., Litvinov, V., Vladimirskii, M., Perelman, M., Chemousova, L., Erokhin, V., Zasedatelev, A., and Mirzabekov, A., J. Clin. Microbiol., 2001, vol. 39, pp. 2531-2540.
12. Drobyshev, A., Zasedatelev, A., Yershov, G., and Mirzabekov, A., Nucleic Acids Res., 1999, vol. 27, pp. 4100-4105.
13. Chechetkin, V.R., Turygin, A.Y., Proudnikov, D.Y., Prokopenko, D.V., Kirillov, E.V., and Mirzabekov, A.D., J. Biomol. Struct. Dyn., 2000, vol. 18, pp. 83-101.
14. Proudnikov, D., Kirillov, E., Chumakov, K., Donlon, J., Rezapkin, G., and Mirzabekov, A., Biologicals, 2000, vol. 28, pp. 57-66.
15. Proudnikov, D., Timofeev, E., and Mirzabekov, A., Anal. Biochem., 1998, vol. 259, pp. 34-41.
16. Proudnikov, D. and Mirzabekov, A., Nucleic. Acids. Res., 1996, vol. 15, pp. 4535-4542.
17. Bavykin, S.G., Akowski, J.P., Zakhariev, V.M., Barsky, V.E., Perov, A.N., and Mirzabekov, A.D., Appl. Environ. Microbiol., 2001, vol. 67, pp. 922-928.
18. Livshits, M. and Mirzabekov, A., Biophys. J., 1996, vol. 71, pp. 2795-2801.
19. Fotin, A., Drobyshev, A., Proudnikov, D., Perov, A., and Mirzabekov, A., Nucleic Acids Res., 1998, vol. 26, pp. 1515-1521.
20. Drobyshev, A., Mologina, N., Shick, V., Pobedimskaya, D., Yershov, G., and Mirzabekov, A., Gene, 1997, vol. 188, pp. 45-52.
21. SantaLucia, J., Allawi, H.T., and Seneviratne, P.A., Biochemistry, 1996, vol. 35, pp. 3555-3562.
22. Timofeev, E. and Mirzabekov, A., Nucleic Acids Res., 2001, vol. 29, pp. 2626-2634.
23. Guschin, D.Y., Mobarry, B.K., Proudnikov, D., Stahl, D.A., Rittmann, B.E., and Mirzabekov, A.D., Appl. Environ. Microbiol., 1997, vol. 63, pp. 23397-23402.
24. Bonch-Osmolovskaya, E.A., Miroshnichenko, M.L., Lebedinsky, A.V., Chernyh, N.A., Nazina, T.N., Ivoilov, V.S., Belyaev, S.S., Boulygina, E.S., Lysov, Yu.P., Perov, A.N., Mirzabekov, A.D., Hippe, H., Stackebrandt, E., Haridon, S.L., and Jeanthon, C., Appl. Environ. Microbiol., 2002 (in press).
25. Liu, W.-T, Mirzabekov, A., and Stahl, D., Appl. Environ. Microbiol., 2001, vol. 3, pp. 619-629.
26. Khrapko, K., Lysov, Y., Khorlin, A., Ivanov, I., Yershov, G., Vasilenko, S., Florentiev, V., and Mirzabekov, A., Sequence, 1991, vol. 1, pp. 375-388.
27. Parinov, S., Barsky, V., Yershov, G., Kirillov, E., Timofeev, E., Belgovsky, A., and Mirzabekov, A., Nucleic Acids Res., 1996, vol. 24, pp. 2998-3004.
28. Dubiley, S., Kirillov, E., Lysov, Y., and Mirzabekov, A., Nucleic Acids Res., 1997, vol. 25, pp. 2259-2265.
29. Tillib, S., Strizhkov, B., and Mirzabekov, A., Anal. Biochem., 2001, vol. 292, pp.155-160.
30. Barsky, Y., Grammatin, A., Ivanov, A., Kreindlin, E., Kotova, E., Barskii, V., and Mirzabekov, A., J. Opt. Technol., 1998, vol. 65, pp. 938-941.
31. Dubiley, S., Kirillov, E., and Mirzabekov, A., Nucleic Acids Res., 1999, vol. 27, p. E19.
32. Strizhkov, B.N., Drobyshev, A.L., Mikhailovich, V.M., and Mirzabekov, A.D., BioTechniques, 2000, vol. 29, pp. 844-854.
33. Vasiliskov, V., Prokopenko, D., and Mirzabekov, A., Nucleic Acids Res., 2001, vol. 29, pp. 2303-2313.
34. Lysov, Yu., Chernyi, A., Balaeff, A., Beattie, K., and Mirzabekov, A., J. Biomol. Struct. Dyn., 1994, vol. 11, pp. 797-812.
35. Stomakhin, A.A., Vasiliskov, V.A., Timofeev, E., Schulga, D., Cotter, R.J., and Mirzabekov, A.D., Nucleic Acids Res., 2000, vol. 28, pp. 1193-1198.
36. Musser, J.M., Clin. Microbiol. Rev., 1995, vol. 8, pp. 496-514.
37. Nasedkina, T., Domer, P., Zharinov, V., Ezhkova, E., Dormeneva, E., Lysov, Yu., Shick, V., and Mirzabekov, A., Leucemia, 2002 (in press).
38. Lapa, S., Chikova, A., Shchelkunov, S., Mikheev, M., Mikhailovich, V., Sobolev, A., Blinov, V., Babkin, I., Zasedatelev, A., Sandakhchiev, L., and Mirzabekov, A., J. Clin. Microbiol., 2002 (in press).
39. Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X.C., Stern, D., Winkler, J., Lockhart, D.J., Morris, M.S., and Fodor, S.P.A., Science, 1996, vol. 274, pp. 610-614.