A new method based on entropy theory for genomic sequence analysis

Acta Biotheoretica

Volumn 50, Issue 3, 2002, Pages 155-165

  Xiao, Ming ^a   Zhu, Zhi Zhan ^a   Liu, Jueping ^a   Zhang, Chu Yu ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

Classical Swine Fever Virus; Entropy; Sensitive positions; Sequence analysis

Indexed keywords

ENTROPY; GENOME;

ALGORITHMS; BASE SEQUENCE; BAYES THEOREM; CLASSICAL SWINE FEVER VIRUS; DATABASES, NUCLEIC ACID; ENTROPY; GENOME, VIRAL; MATHEMATICAL COMPUTING; MODELS, GENETIC; MODELS, STATISTICAL; MOLECULAR SEQUENCE DATA; RIBOSOMAL PROTEINS; SEQUENCE ANALYSIS, RNA; SUPPORT, NON-U.S. GOV'T;

ANIMALIA; CLASSICAL SWINE FEVER VIRUS; DNA VIRUSES; PESTIVIRUS; SUS SCROFA;

RIBOSOME PROTEIN;

ALGORITHM; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; ENTROPY; GENETICS; MATHEMATICAL COMPUTING; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; NUCLEOTIDE SEQUENCE; PESTIVIRUS; SEQUENCE ANALYSIS; STATISTICAL MODEL; VIRUS GENOME;

EID: 0036345917     PISSN: 00015342     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1016587025917     Document Type: Article

References (24)

1. Identification and properties of the RNA-dependent RNA polymerase of hepatitis C virus
2. Selection of DNA binding sites by regulatory proteins: Statistical-mechanical theory and application to operators and promoters
3. Selection of DNA binding sites by regulatory proteins: II. The binding specificity of cyclic AMP receptor protein to recognition sites
4. Maximal entropy and NMR: A new approach
5. Quantitative specificity of the Mnt repressor
6. Prediction of transcription regulatory sites in archaea by a comparative genomic approach
7. Cytopathogenic and noncytopathogenic RNA replicons of classical swine fever virus
8. Processing of the envelope glycoproteins of pestiviruses
9. Information content of binding sites on nucleotide sequemces
10. Maximal entropy image reconstruction: General algorithm
11. Processing of pestivirus polyproteins: Cleavage site between autoprotease and nucleocapsid protein of classical swine fever virus
12. Computer methods for analyzing sequence recognition of nucleic acids
13. Information content and free energy in DNA-protein interactions
14. Specificity, free energy and information content in proten-DNA interactions
15. Identifying protein-binding sites from unaligned DNA fragments
16. Epitope mapping of envelope glycoprotein E1 of hog cholera virus strain Brescia
17. Bovine viral diarrhea virus NS3 serine proteinase: Polyprotein cleavage sites, cofactor requiremonts, and molecular model of an enzyme essential for pestivirus replication
18. Sequence and structural elements at the 3′ terminus of bovine viral diarrhea virus genomic RNA: Functional role during RNA replication
19. Identification and characterization of an RNA-dependent RNA polymerase activity within the nonstructural protein 5B region of bovine viral diarrhea virus