Phylogenetic evidence for adaptive evolution of dengue viruses in nature

Journal of General Virology

Volumn 83, Issue 7, 2002, Pages 1679-1689

  Twiddy, S Susanna ^a   Woelk, Christopher H ^a   Holmes, Edward C ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; EPITOPE; GLYCOPROTEIN; STIMULATORY GUANINE NUCLEOTIDE BINDING PROTEIN; VIRUS PROTEIN;

AMINO ACID ANALYSIS; AMINO ACID SUBSTITUTION; ANTIGENICITY; ARTICLE; B LYMPHOCYTE; CELL GROWTH; CONTROLLED STUDY; DENGUE VIRUS; EVOLUTIONARY ADAPTATION; GENETIC SELECTION; GENOTYPE; MEMBRANE FUSION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; SEROTYPE; T LYMPHOCYTE; VIRUS CAPSID; VIRUS ENVELOPE; VIRUS GENE; VIRUS ISOLATION;

DENGUE VIRUS; DENGUE VIRUS GROUP; RNA VIRUSES;

EID: 0036297139     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-83-7-1679     Document Type: Article

References (49)

1. Serologically defined linear epitopes in the envelope protein of dengue 2 (Jamaica strain 1409)
2. Differential susceptibility of Aedes aegypti to infection by the American and Southeast Asian genotypes of dengue type 2 virus
3. Synthesis of dengue virus RNA in vitro: Initiation and the involvement of proteins NS3 and NS5
4. Characterization of protease cleavage sites involved in the formation of the envelope glycoprotein and three non-structural proteins of dengue virus type 2, New Guinea C strain
5. Positive selection on the H3 hemagglutinin gene of human influenza virus A
6. Molecular biology of dengue viruses
7. Infection of human cells by dengue virus is modulated by different cell types and viral strains
8. Identification of an epitope on the dengue virus membrane (M) protein defined by cross-protective monoclonal antibodies: Design of an improved epitope sequence based on common determinants present in both envelope (E and M) proteins
9. Precise location of sequential dengue virus subcomplex and complex B cell epitopes on the nonstructural-1 glycoprotein
10. Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins
11. Deletion analysis of dengue virus type 4 nonstructural protein NS2B: Identification of a domain required for NS2B-NS3 protease activity
12. The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies
13. The 37-amino-acid interdomain of dengue virus NS5 protein contains a functional NLS and inhibitory CK2 site
14. Recognition of synthetic oligopeptides from nonstructural proteins NS1 and NS3 of dengue-4 virus by sera from dengue virus-infected children
15. Analysis of flavivirus envelope proteins reveals variable domains that reflect their antigenicity and may determine their pathogenesis
16. Epitopic analysis of antigenic determinants on the surface of dengue-2 virions using monoclonal antibodies
17. Topological mapping of unique epitopes on the dengue-2 virus NS1 protein using monoclonal antibodies
18. Identification of continuous epitopes of the envelope glycoprotein of dengue type 2 virus
19. - cytotoxic T-cell clones: Multiple patterns of virus cross-reactivity recognized by NS3-specific T-cell clones
20. Recognition of helper T cell epitopes in envelope (E) glycoprotein of Japanese encephalitis, West Nile and dengue viruses
21. Identification of helper T cell epitopes of dengue virus E-protein
22. Dengue virus structural differences that correlate with pathogenesis
23. Phylogenetic relationships of dengue-2 viruses
24. The molecular basis of virulence of the encephalitogenic flaviviruses
25. Antigenic structure of the flavivirus envelope protein
26. Antigenic structure of the flavivirus envelope protein E at the molecular level, using tick-borne encephalitis virus as a model
27. Use of recombinant fusion proteins and monoclonal antibodies to define linear and discontinuous antigenic sites on the dengue virus envelope glycoprotein
28. Conversion of dengue virus replicative form RNA (RF) to replicative intermediate (RI) by nonstructural proteins NS-5 and NS-3
29. The envelope glycoprotein from tick-borne encephalitis virus at 2 Å resolution
30. Molecular evolution of dengue type 2 virus in Thailand
31. Immunochemistry of dengue viruses
32. Antibodies to dengue 2 virus E-glycoprotein synthetic peptides identify antigenic conformation
33. T-helper cell epitopes on the E-glycoprotein of dengue 2 Jamaica virus
34. Monoclonal antibody mapping of the envelope glycoprotein of the dengue 2 virus, Jamaica
35. A single nucleotide change in the E protein gene of dengue virus 2 Mexican strain affects neurovirulence in mice
36. +T-cell clones specific for the dengue virus NS3 protein: Flavivirus cross-reactivity and influence of infecting serotype
37. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
38. Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus
39. PrM- and cell-binding domains of the dengue virus E protein
40. Immune and artificial selection in the haemagglutinin (H) glycoprotein of measles virus
41. Widespread intraserotype recombination in natural populations of dengue virus
42. PAML: A program package for phylogenetic analysis by maximum likelihood
43. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
44. Statistical methods for detecting molecular adaptation
45. Codon-substitution models for heterogeneous selection pressure at amino acid sites
46. Population dynamics of flaviviruses revealed by molecular phylogenies
47. Genealogical evidence for positive selection in the nef gene of HIV-1