A new algorithm for analysis of oligonucleotide arrays: Application to expression profiling in mouse brain regions

Journal of Molecular Biology

Volumn 317, Issue 2, 2002, Pages 225-235

  Zhang, Li ^a   Wang, Long ^a   Ravindranathan, Ajay ^a   Miles, Michael F ^a  

^a UNIVERSITY OF CALIFORNIA SAN FRANCISCO   (United States)

Author keywords

Data analysis; Mouse brain; Oligonucleotide microarrays; S score

Indexed keywords

CALCIUM; MYELIN; OLIGONUCLEOTIDE; TRANSCRIPTION FACTOR;

ACCURACY; ALGORITHM; ANALYTICAL ERROR; ANIMAL TISSUE; ARTICLE; BRAIN REGION; CALCIUM SIGNALING; CLUSTER ANALYSIS; CONTROLLED STUDY; DNA MICROARRAY; FEMALE; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENETIC ANALYSIS; IN SITU HYBRIDIZATION; INTERMETHOD COMPARISON; MOLECULAR MODEL; MOUSE; NEUROFILAMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PREFRONTAL CORTEX; PRIORITY JOURNAL; PROTEIN SYNTHESIS; QUALITY CONTROL; RELIABILITY; SCORING SYSTEM; STATISTICAL SIGNIFICANCE; TISSUE DISTRIBUTION; VALIDATION PROCESS; VENTRAL TEGMENTUM;

EID: 0036289082     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.5350     Document Type: Article

References (37)

1. Genomics, gene expression and DNA arrays
2. DNA chips: Promising toys have become powerful tools
3. Biomedical discovery with DNA arrays
4. Cluster analysis and display of genome-wide expression patterns
5. Significance analysis of microarrays applied to the ionizing radiation response
6. Expression monitoring by hybridization to high-density oligonucleotide arrays
7. The significance of digital gene expression profiles
8. Computational methods for the identification of differential and coordinated gene expression
9. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
10. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
11. From the cover: Regional and strain-specific gene expression mapping in the adult mouse brain
12. Functional discovery via a compendium of expression profiles
13. Normalization strategies for cDNA microarrays
14. Analysis of large-scale gene expression data
15. Analysis of gene expression data using self-organizing maps
16. Knowledge-based analysis of microarray gene expression data by using support vector machines
17. Exploring expression data: Identification and analysis of coexpressed genes
18. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
19. Isolation and characterization of a novel oligodendrocyte-specific protein
20. Neurofilament mRNAs are present and translated in the normal and severed sciatic nerve
21. Spatial distribution of mRNAs for myelin proteins in primary cultures of mouse brain
22. Mechanisms of myelin basic protein and proteolipid protein targeting in oligodendrocytes
23. The angiotensinogen gene is expressed in both astrocytes and neurons in murine central nervous system
24. Expression of the gene encoding the extracellular matrix glycoprotein SPARC in the developing and adult mouse brain
25. Oligodendrocytes in brain and optic nerve express the beta3 subunit isoform of Na,K-ATPase
26. Protein kinase C activity modulates myelin gene expression in enriched oligodendrocytes
27. Genetic and functional analysis of neuronatin in mice with maternal or paternal duplication of distal Chr 2
28. Presentation of alpha B-crystallin to T cells in active multiple sclerosis lesions: An early event following inflammatory demyelination
29. The expression of voltage-dependent calcium channel beta subunits in human cerebellum
30. Development of telencephalin in the human cerebrum
31. A 104-kDa diacylglycerol kinase containing ankyrin-like repeats localizes in the cell nucleus
32. Immunohistochemical localization of an inositol 1,4,5-trisphosphate receptor, P400, in neural tissue: Studies in developing and adult mouse brain
33. MEF2C, a MADS/MEF2-family transcription factor expressed in a laminar distribution in cerebral cortex
34. Telencephalon-restricted expression of BF-1, a new member of the HNF-3/fork head gene family, in the developing rat brain
35. Comparison of the mammalian and avian telencephalon from the perspective of gene expression data
36. Cellular influences on RNA sorting in neurons and glia: An in situ hybridization histochemical study