Complete nucleotide sequence of plasmid Rts1: Implications for evolution of large plasmid genomes

Journal of Bacteriology

Volumn 184, Issue 12, 2002, Pages 3194-3202

  Murata, Takahiro ^a   Ohnishi, Makoto ^a   Ara, Takeshi ^a   Kaneko, Jun ^a   Han, Chang Gyun ^a   Li, Yong Fang ^a   Takashima, Kayoko ^a   Nojima, Hideaki ^a   Nakayama, Keisuke ^a   Kaji, Akira ^a   Kamio, Yoshiyuki ^a   Miki, Takeyoshi ^a   Mori, Hirotada ^a   Ohtsubo, Eiichi ^a   Terawaki, Yoshiro ^a   Hayashi, Tetsuya ^a  

^a UNIVERSITY OF MIYAZAKI   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PLASMID DNA;

ARTICLE; GENOME; HEAT SENSITIVITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHENOTYPE; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEUS VULGARIS;

BACTERIAL PROTEINS; BASE SEQUENCE; CHROMOSOME MAPPING; CONJUGATION, GENETIC; DNA REPLICATION; DNA TRANSPOSABLE ELEMENTS; EVOLUTION, MOLECULAR; GENES, DUPLICATE; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLASMIDS; PROTEUS VULGARIS; REPLICATION ORIGIN; SEQUENCE ANALYSIS, DNA;

NEGIBACTERIA; PLASMID RTS1; PROTEUS VULGARIS;

EID: 0036267349     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.12.3194-3202.2002     Document Type: Article

References (68)

1. Partition of unit-copy miniplasmids to daughter cells. III. The DNA sequence and functional organization of the P1 partition region
2. A single DnaA box is sufficient for initiation from the P1 plasmid origin
3. P1 plasmid replication: Replicon structure
4. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
5. Replication arrest
6. GENEMARK: Parallel gene recognition for both DNA strands
7. A complementation analysis of the restriction and modification of DNA in Escherichia coli
8. Conjugation systems of incT plasmids
9. R factors from Proteus rettgeri
10. Identification and classification of bacterial plasmids
11. Recognition of the P1 plasmid centromere analog involves binding of the ParB protein and is modified by a specific host factor
12. Host cell growth in the presence of the thermosensitive drug resistance factor, Rts1
13. The thermosensitive lesion in the replication of the drug resistance factor Rts1
14. Conjugative pili of IncP plasmids, and the Ti plasmid T pilus are composed of cyclic subunits
15. Deoxyribonucleic acid base composition of Proteus and Providencia organisms
16. Structure and function of the F factor and mechanism of conjugation
17. Participation of Escherichia coli integration host factor in the P1 plasmid partition system
18. Conjugative plasmids of enteric bacteria from many different incompatibility groups have similar genes for single-stranded DNA-binding proteins
19. Base composition of deoxyribonucleic acid of the temperature-sensitive kanamycin-resistant R factor Rts1
20. A specific protease encoded by the Conjugative DNA transfer systems of IncP and Ti plasmids is essential for pilus synthesis
21. A consensus sequence of three DNA replication terminus sites on the E. coli chromosome is highly homologous to the terR sites of the R6K plasmid
22. Identification of the DNA sequence from the E. coli terminus region that halts replication forks
23. Arrest of bacterial DNA replication
24. Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in E. coli
25. Characterization of plasmid regions of foodborne Yersinia enterocolitica biogroup 1A strains hybridizing to the Yersinia enterocolitica virulence plasmid
26. Core sequence of two separable terminus sites of the R6K plasmid that exhibit polar inhibition of replication is a 20 bp inverted repeat
27. The kanamycin resistance transposon Tn 2680 derived from the R plasmid Rts1 and carried by phage P1Km has flanking 0.8-kb-long direct repeats
28. Mechanism of T4 phage restriction by plasmid Rts1. Cleavage of T4 phage DNA by Rts1-specific enzyme
29. Cupric ion resistance as a new genetic marker of a temperature-sensitive R plasmid. Rts1 in Escherichia coli
30. Cloning of the replication and incompatibility regions of a plasmid derived from Rts1
31. Essential DNA sequence for the replication of Rts1
32. Molecular cloning and expression of a novel hydroxymethylcytosine-specific restriction enzyme (PvuRts1I) modulated by glucosylation of DNA
33. Structure of a replication-terminator protein complexed with DNA
34. Complete nucleotide sequence of mini-Rts1 and its copy mutant
35. Identification of mucAB-like homologs on two IncT plasmids, R394 and Rts1
36. The transfer region of IncI1 plasmid R64: Similarities between R64 tra and Legionella icm/dot genes
37. Inactivation of the replication-termination system affects the replication mode and causes unstable maintenance of plasmid R1
38. DNA sequence and analysis of the bet genes encoding the osmoregulatory, choline-glycine betaine pathway of Escherichia coli
39. DNA procession reactions in bacterial conjugation
40. Methylation of DNA
41. R plasmid Rts1-mediated production of extracellular deoxyribonuclease in Escherichia coli
42. The Escherichia coli dsbC (xprA) gene encodes a periplasmic protein involved in disulfide bond formation
43. Three short fragments of Rts1 DNA are responsible for the temperature-sensitive growth phenotype (Tsg) of host bacteria
44. Organization of the Tn6-related kanamycin resistance transposon Tn2680 carrying two copies of IS26 and an IS903 variant, IS9O3B
45. Molecular analysis of the folC gene of Pseudomonas aeruginosa
46. The complete nucleotide sequence of φCTX, a cytotoxin-converting phage of Pseudomonas aeruginosa: Implications for phage evolution and horizontal gene transfer via bacteriophages
47. Identification of the Rts1 DNA fragment responsible for temperature-sensitive growth of host cells harboring a drug resistance factor Rts1
48. Identification of an Rts1 DNA fragment conferring temperature-dependent instability to vector plasmids
49. Genetic and biochemical analysis of an endonuclease encoded by the IncN plasmid pKM101
50. Making and breaking disulfide bonds
51. The mutagenesis protein UmuC is a DNA polymerase activated by UmuD′, RecA, and SSB and is specialized for translesion replication
52. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
53. The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature-sensitive for transfer
54. Nucleotide sequence of an Rts1 fragment causing temperature-dependent instability
55. Thermosensitive replication of a kanamycin resistance factor
56. Temperature sensitivity of cell growth in Escherichia coli associated with the temperature-sensitive R (KM) factor
57. Replication of the R factor Rts1 in Proteus mirabilis
58. Molecular cloning and mapping of a deletion derivative of the plasmid Rts1
59. Gene product identification and promoter analysis of hig locus of plasmid Rts1
60. A new plasmidencoded proteic killer gene system: Cloning, sequencing, and analyzing big locus of plasmid Rts1
61. Specific protein-DNA and protein-protein interaction in the hig gene system, a plasmid-borne proteic killer gene system of plasmid Rts1
62. The SOS response of Escherichia coli
63. DNA processing and replication during plasmid transfer between gram-negative bacteria
64. Improved M13 phage cloning vectors and host strains: Nucleotide sequence of the M13mp18 and pUC19 vectors
65. Recombination between a thermosensitive kanamycin resistance factor and a nonthermosensitive multiple-drug resistance factor
66. An unusual mutation in RepA increases the copy number of a stringently controlled plasmid (Rts1 derivative) by over one hundred fold
67. Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics