Cytoplasmic intermediate filaments are stably associated with nuclear matrices and potentially modulate their DNA-binding function

DNA and Cell Biology

Volumn 21, Issue 3, 2002, Pages 213-239

  Tolstonog, Genrich V ^a   Sabasch, Michael ^a   Traub, Peter ^a  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

3,5 DIIODOSALICYLIC ACID; CYTOKERATIN; DIGITONIN; DNA FRAGMENT; LAMIN B; LITHIUM; TRITON X 100; VIMENTIN;

ANIMAL CELL; ARTICLE; CELL CULTURE; CELL DIFFERENTIATION; CELL MEMBRANE PERMEABILITY; CELL NUCLEUS MATRIX; CELL PROLIFERATION; CELL STRAIN; CELL SUSPENSION; CONTROLLED STUDY; CROSS LINKING; DNA BINDING; DNA SEQUENCE; ELECTRON MICROSCOPY; EPITHELIUM CELL; FIBROBLAST; GLIOMA CELL; HUMAN; HUMAN CELL; IMMUNOBLOTTING; IMMUNOFLUORESCENCE MICROSCOPY; INTERMEDIATE FILAMENT; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONTENT; SHEAR STRESS;

ANIMALS; CELL LINE; CELL NUCLEUS; CELLS, CULTURED; CYTOPLASM; DNA; FIBROBLASTS; HELA CELLS; HUMANS; INTERMEDIATE FILAMENT PROTEINS; INTERMEDIATE FILAMENTS; KERATINS; LAMIN TYPE B; LAMINS; MICE; MICROSCOPY, FLUORESCENCE; NUCLEAR MATRIX; NUCLEAR PROTEINS; TUMOR CELLS, CULTURED; VIMENTIN;

ANIMALIA;

EID: 0036256945     PISSN: 10445498     EISSN: None     Source Type: Journal    
DOI: 10.1089/10445490252925459     Document Type: Article

References (138)

1. Changes in the expression of cytokeratins and nuclear matrix proteins are correlated with the level of differentiation in human prostate cancer
2. Increase of cytokeratin D during liver regeneration: Association with the nuclear matrix
3. A comprehensive study on the isolation and characterization of the HeLa S3 nuclear matrix
4. Lamin B distribution and association with peripheral chromatin revealed by optical sectioning and electron microscopy tomography
5. Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions
6. The nuclear matrix: Mapping genomic organization and function in the cell nucleus
7. Chromatin domain surrounding the human interferon-β gene as defined by scaffold-attached regions
8. Biological significance of unwinding capability of nuclear matrix-associating DNAs
9. Scaffold/matrix-attached regions: Structural properties creating transcriptionally active loci
10. Scaffold/matrix-attached regions: Topological switches with multiple regulatory functions
11. Nature of DNA sequences at the attachment regions of genes to the nuclear matrix
12. Chromatin domains and prediction of MAR sequences
13. A unified model explaining the preferential repair of active over inactive genes and of the transcribed over the non-transcribed strand: A leading role for transcription factors and matrix anchorage
14. On the relationship of matrix association and DNA replication
15. The nuclear matrix: Three-dimensional architecture and protein composition
16. Interactions of intermediate filaments with cell structures
17. Involvement of vimentin in the reverse transformation reaction
18. Association of DNase sensitive chromatin domains with the nuclear periphery in 3T3 cells in vitro
19. Sequences of DNA fragments contacting the nuclear lamina in vivo
20. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites
21. Chromosome territories, interchromatin domain compartment, and nuclear matrix: An integrated view of the functional nuclear architecture
22. Nuclear matrix proteins as cancer markers
23. The nuclear matrix and the regulation of chromatin organization and function
24. Network antibodies identify nuclear lamin B as physiological attachment site for peripherin intermediate filaments
25. Structure of an invertebrate gene encoding cytoplasmic intermediate filament (IF) proteins: Implications for the origin and the diversification of IF proteins
26. Protein synthesis in postnuclear supernatants from mengovirus-infected Ehrlich ascites tumor cells
27. A nuclear matrix protein related to intermediate filaments proteins is a member of the complex binding alphoid DNA in vitro
28. Nucleic acid-binding properties of hn-RNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro
29. The nonchromatin substructures of the nucleus: The ribonucleoprotein (RNP)-containing and RNP-depleted matrices analyzed by sequential fractionation and resinless section electron microscopy
30. Epithelial cytoskeletal framework and nuclear matrix-intermediate filament scaffold: Three-dimensional organization and protein composition
31. Interaction of intermediate filaments with nuclear lamina and cell periphery
32. Intermediate filaments: Structure, dynamics, function, and disease
33. Structure of cytomatrix and nuclear matrix revealed by embedment-free electron microscopy
34. Crosslinking of DNA to nuclear lamina proteins by UV irradiation in vivo
35. The inner nuclear membrane: Simple, or very complex?
36. Lamin B constitutes an intermediate filament attachment site at the nuclear envelope
37. Binding of two desmin derivatives to the plasma membrane and the nuclear envelope of avian erythrocytes: Evidence for a conserved site-specificity in intermediate filament-membrane interactions
38. Similarity between nuclear matrix proteins of various cells revealed by an improved isolation method
39. Reassembling proteins and chaperones in human nuclear matrix protein fractions
40. The α-helical rod domain of human lamins A and C contains a chromatin binding site
41. Comparative study and prediction of DNA fragments associated with various elements of the nuclear matrix
42. The nuclear lamina: Molecular organization and interaction with chromatin
43. Lamins and lamin-binding proteins in functional chromatin organization
44. hNMP200: A novel human common nuclear matrix protein combining structural and regulatory functions
45. Induction of a regular nuclear lattice by overexpression of NuMA
46. DNA binding properties of the nuclear matrix and individual nuclear matrix proteins. Evidence for salt-resistant DNA binding sites
47. A new look at the nuclear matrix
48. Self assembly of NuMA: Multiarm oligomers as structural units of a nuclear lattice
49. Binding of fluorescence- and gold-labeled oligodeoxyribonucleotides to cytoplasmic intermediate filaments in epithelial and fibroblast cells
50. DNA-mediated transport of the intermediate filament protein vimentin into the nucleus of cultured cells
51. Chromatin motion in neuronal interphase nuclei-changes induced by disruption of intermediate filaments
52. Core filaments of the nuclear matrix
53. Nuclear matrix proteins as structural and functional components of the mitotic apparatus
54. Structure, assembly, and dynamics of intermediate filaments
55. Intermediate filament assembly: Fibrillogenesis is driven by decisive dimer-dimer interactions
56. Intermediate filaments and their associates: Multi-talented structural elements specifying cytoarchitecture and cytodynamics
57. Chromatin, nuclear matrix and the cytoskeleton: Role of cell structure in neoplastic transformation
58. The nucleoskeleton and attached activities
59. Visualization of a filamentous nucleoskeleton with a 23 nm axial repeat
60. The structural basis of nuclear function
61. A gentle method for preparing cyto- and nucleo-skeletons and associated chromatin
62. The organizational fate of intermediate filament networks in two epithelial cell types during mitosis
63. Gel electrophoretic analysis of nuclear matrix fractions isolated from different human cell lines
64. Binding specificity of a nuclear scaffold: Supercoiled, single-stranded, and scaffold-attached-region DNA
65. Detection of scaffold-attached regions (SARs) by in vitro techniques: Activities of these elements in vivo
66. Interaction in vitro of non-epithelial intermediate filament proteins with super-coiled plasmid DNA
67. Electroblotting of multiple gels: A simple apparatus without buffer tank for rapid transfer of proteins from polyacrylamide to nitrocellulose
68. Interaction in vitro of type III intermediate filament proteins with triplex DNA
69. Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state
70. General organization of protein in HeLa 40S nuclear ribonucleoprotein particles
71. 1
72. Binding of matrix attachment regions to lamin polymers involves single-stranded regions and the minor groove
73. Structure, subnuclear distribution, and nuclear matrix association of the mammalian telomeric complex
74. Regulated docking of nuclear membrane vesicles to vimentin filaments during mitosis
75. Techniques in aging research. Digital light microscopy: Prerequisite for optimum contrast enhancement and increase of resolution
76. hnRNP proteins and B23 are the major proteins of the internal nuclear matrix of HeLa S3 cells
77. Composition and structure of the internal nuclear matrix
78. INMP, a novel intranuclear matrix protein related to the family of intermediate filament-like proteins: Molecular cloning and sequence analysis
79. Hierarchical binding of DNA fragments derived from scaffold-attached regions: Correlation of properties in vitro and function in vivo
80. Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
81. The NUF1 gene encodes an essential coiled-coil related protein that is a potential component of the yeast nucleoskeleton
82. Review: The dynamics of the nuclear lamins during the cell cycle - Relationship between structure and function
83. Nuclear matrins: Identification of the major nuclear matrix proteins
84. Experimental observations of a nuclear matrix
85. Localization of nuclear matrix core filament proteins at interphase and mitosis
86. Phylogenetic occurrence of coiled coil proteins: Implications for tissue structure in metazoa via a coiled coil tissue matrix
87. In vivo DNA-protein cross-linking by cis- and trans-diamminedichloroplatinum (II)
88. Interphase nuclear envelope lamins form a discontinuous network that interacts with only a fraction of the chromatin in the nuclear periphery
89. Intranuclear network of 3-5 nm and 8-10 nm fibers in EL-4 lymphoma cells
90. Transposition of DNase hypersensitive chromatin to the nuclear periphery coincides temporally with nerve growth factor-induced up-regulation of gene expression in PC12 cells
91. Thinking about a nuclear matrix
92. Half a century of "the nuclear matrix"
93. The nuclear matrix: Past and present
94. The nucleoskeleton: A permanent structure of cell nuclei regardless of their transcriptional activity
95. Histones H3/H4 form a tight complex with the inner nuclear membrane protein LBR and heterochromatin protein 1
96. Role of the cytoskeleton in genome regulation and cancer
97. Arsenite induces DNA-protein crosslinks and cytokeratin expression in the WRL-68 human hepatic cell line
98. Cytoskeleton and mitochondrial morphology and function
99. Chromosomal DNA loops may constitute basic units of the eukaryotic genome organization and evolution
100. Identification and characterization of nuclear matrix-attachment regions in the human serpin gene cluster at 14q32.1
101. Electron microscopic demonstration of chromatin-nuclear matrix association in the nuclei of Triton X-extracted rat anterior pituitary cells
102. The in vitro DNA-binding properties of purified nuclear lamina proteins and vimentin
103. Signal transduction pathways and chromatin structure in cancer cells
104. Estrogen regulates the association of intermediate filament proteins with nuclear DNA in human breast cancer cells
105. Nuclear matrix proteins associated with DNA in situ in hormone-dependen t and hormone-independent human breast cancer cell lines
106. Altered profiles in nuclear matrix proteins associated with DNA in situ during progression of breast cancer cells
107. Intermediate filament systems are collapsed onto the nuclear surface after isolation of nuclei from tissue culture cells
108. Nuclear matrix preparations from liver tissue and from cultured vertebrate cells: Differences in major polypeptides
109. Interrelationships of transcriptional machinery with nuclear architecture
110. Molecular and cellular biology of intermediate filaments
111. Origin and roles of nuclear matrix proteins. Specific functions of the MAR-binding protein MeCP2/ARB
112. Scaffold attachment regions in centromere-associated DNA
113. Nuclear lamins: Their structure, assembly, and interactions
114. Mammalian recombination hot spot in a DNA loop anchorage region: A model for the study of common fragile sites
115. Nuclear matrix-like filaments and fibrogranular complexes form through the rearrangement of specific nuclear ribonucleoproteins
116. A chromatin binding site in the tail domain of nuclear lamins that interacts with core histones
117. Isolation of SDS-stable complexes of the intermediate filament protein vimentin with repetitive, mobile, nuclear matrix attachment region, and mitochondrial DNA sequence elements from cultured mouse and human fibroblasts
118. Role of the intermediate filament protein vimentin in delaying senescence and in the spontaneous immortalization of mouse embryo fibroblasts
119. Intermediate filaments reconstituted from vimentin, desmin, and glial fibrillary acidic protein selectively bind repetitive and mobile DNA sequences from a mixture of mouse genomic DNA fragments
120. Effect of the ionic environment on the incorporation of the intermediate-sized filament protein vimentin into residual cell structures upon treatment of Ehrlich ascites tumour cells with Triton X-100
121. Intermediate filament proteins: Cytoskeletal elements with gene-regulatory function?
122. Separation and characterization of homo- and hetero-oligomers of the intermediate filament proteins desmin and vimentin
123. Characterization of the nucleic acid-binding activities of the isolated amino-terminal head domain of the intermediate filament protein vimentin reveals its close relationship to the DNA-binding regions of some prokaryotic single-stranded DNA-binding proteins
124. The interaction in vitro of the intermediate filament protein vimentin with naturally occurring RNAs and DNAs
125. Interaction in vitro of non-epithelial intermediate filament proteins with histones
126. The nuclear scaffold exhibits DNA-binding sites selective for supercoiled DNA
127. Identification and characterization of a nuclear scaffold protein that binds the matrix attachment region DNA
128. Chicken MAR binding protein p120 is identical to human heterogeneous nuclear ribonucleoprotein (hnRNP)U
129. Sites of nucleic acid binding in type I-IV intermediate filament subunit proteins
130. Resinless section immunogold electron microscopy of karyo-cytoskeletal frameworks of eukaryotic cells cultured in vitro. Absence of a salt-stable nuclear matrix from mouse plasmacytoma MPC-11 cells
131. Selective binding of specific mouse genomic DNA fragments by mouse vimentin filaments in vitro
132. Aspects of the evolution of the lamin/intermediate filament protein family: A current analysis of invertebrate intermediate filament proteins
133. Cross-linking of cytokeratin to DNA in vivo by chromium salt and cis-diamminedichloroplatinum (II)
134. Intranuclear anchoring of repetitive DNA sequences: Centromeres, telomeres, and ribosomal DNA
135. The inner nuclear membrane
136. A novel procedure for pre-embedding double immunogold-silver labeling at the ultrastructural level
137. Binding of lamin A to polynucleosomes
138. Binding of matrix attachment regions to nuclear lamin is mediated by the rod domain and depends on the lamin polymerization state