Similarity between nuclear matrix proteins of various cells revealed by an improved isolation method

Journal of Cellular Biochemistry

Volumn 71, Issue 3, 1998, Pages 363-374

  Gerner, Christopher ^a,c   Holzmann, Klaus ^a   Grimm, Rudolf ^b   Sauermann, Georg ^a  

^a UNIVERSITY OF VIENNA   (Austria)

^b HEWLETT PACKARD COMPANY   (United States)

^c Inst of Tumorbiology Cancer Res   (Austria)

Author keywords

Heterogeneous nuclear ribonucleoproteins; Nuclear matrix proteins; Preparation method; Two dimensional polyacrylamide gel electrophoresis; Vanadyl ribonucleoside complexes

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CELL NUCLEUS; CELL PROLIFERATION; CELLULAR DISTRIBUTION; HUMAN; HUMAN CELL; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN LOCALIZATION;

AMNIOTIC FLUID; ANTIGENS, NUCLEAR; BLOTTING, WESTERN; CELL FRACTIONATION; CELL NUCLEUS; CELLS, CULTURED; CHILD; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; HUMANS; LAMIN TYPE B; LAMINS; LEUKOCYTES; LIVER; MASS SPECTROMETRY; NUCLEAR MATRIX; NUCLEAR PROTEINS; PEPTIDES; PROTEIN ISOFORMS; RIBONUCLEOPROTEINS; RIBONUCLEOSIDES; SEQUENCE ANALYSIS; TONSIL; TUMOR CELLS, CULTURED; VANADATES;

EID: 0032401696     PISSN: 07302312     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-4644(19981201)71:3<363::AID-JCB5>3.0.CO;2-W     Document Type: Article

References (32)

1. Antalis TM, Godbolt D (1991): Isolation of intact nuclei from hematopoietic cell types. Nucleic Acids Res 19:4301.
2. Berezney R, Coffey DS (1977): Nuclear matrix: Isolation and characterization of a framework structure from rat liver nuclei. J Cell Biol 73:616-637.
3. Berezney R, Jeon KW (1995): "Structural and Functional Organization of the Nuclear Matrix." Int Rev Cytol 162A and 162B. San Diego: Academic Press Inc.
4. Biamonti G, Giacca M, Perini G, Contreas G, Zentilin L, Weighardt F, Guerra M, Della Valle G, Saccone S, Riva S, Falaschi A (1992): The gene for a novel human lamin maps at a highly transcribed locus of chromosome 19 which replicates at the onset of S-phase. Mol Cell Biol 12:3499-3506.
5. Celis JE, Rasmussen HH, Gromov P, Olsen E, Madsen P, Leffers H, Honore B, Dejgaard K, Vorum H, Kristensen DB, Østergaard M, Hauns A, Aagaard Jensen N, Celis A, Basse B, Lauridsen JB, Ratz GP, Andersen AH, Walbum E, Kjærgaard I, Andersen I, Puype M, Van Damme J, Vandekerckhove J (1995): The human keratinocyte two-dimensional protein database (update 1995): Mapping components of signal transduction pathways. Electrophoresis 16:2177-2240.
6. Coligan JE, Kruisbeek AM, Margulies DH, Shevach EM, Strober W (eds) (1997): "Current Protocols in Immunology." New York: John Wiley and Sons, Inc.
7. Fey EG, Penman S (1988): Nuclear matrix proteins reflect cell type of origin in cultured human cells. Proc Natl Acad Sci U S A 85:121-125.
8. Fey EG, Krochmalnic G, Penman S (1986): The non-chromatin structure of the nucleus: The ribonucleoprotein (RNP)-containing and RNP-depleted matrices analyzed by sequential fractionation and resinless section electron microscopy. J Cell Biol 102:1654-1665.
9. Gerner C, Seelos C, Sauermann G (1998): Alteration of nuclear matrix protein composition during apoptosis in rat embryo cells. Exp Cell Res 238:472-480.
10. Göhring F, Schwab BL, Nicotera P, Leist M, Fackelmayer FO (1997): The novel SAR-binding domain of scaffold attachment factor A (SAF-A) is a target in apoptotic nuclear breakdown. EMBO J 16:7361-7371.
11. Goodno CC (1979): Inhibition of myosin ATPase by vanadate ion. Proc Natl Acad Sci U S A 76:2620-2624.
12. Goodno CC (1982): Myosin active-site trapping with vanadate ion. Methods Enzymol 85:116-123.
13. Goodno CC, Taylor EW (1982): Inhibition of actomyosin ATPase by vanadate. Proc Natl Acad Sci U S A 79:21-25.
14. Gotzmann J, Eger A, Meissner M, Grimm R, Gerner C, Sauermann G, Foisner R (1997): Two-dimensional electrophoresis reveals a nuclear matrix-associated nucleolin complex of basic isoelectric point. Electrophoresis 18: 2645-2653.
15. Hochstrasser DF, Harrington MG, Hochstrasser AC, Miller MJ, Merill CR (1988): Methods for increasing the resolution of two-dimensional protein electrophoresis. Anal Biochem 173:424-435.
16. Hoger TH, Zatloukal K, Waizenegger I, Krohne G (1990): Characterization of a second highly conserved B-type lamin present in cells previously thought to contain only a single B-type lamin. Chromosoma 99:379-390.
17. Holzmann K, Korosec T, Gerner C, Grimm R, Sauermann G (1997): Identification of human common nuclear-matrix proteins as heterogeneous nuclear ribonucleoproteins H and H′ by sequencing and mass spectrometry. Eur J Biochem 244:479-486.
18. Janmey PA, Hvidt S, Oster GF, Lamb JL, Stossel TP, Hartwig JH (1990): Effect of ATP on actin filament stiffness. Nature 347:95-99.
19. Kallajoki M, Osborn M (1994): Gel electrophoretic analysis of nuclear matrix fractions isolated from different human cell lines. Electrophoresis 15:520-528.
20. Korosec T, Gerner C, Sauermann G (1997): Common nuclear matrix proteins in rat tissues. Electrophoresis 18:2109-2115.
21. Lienhard GE, Secemski II, Koehler KA, Lindquist RN (1972): Enzymatic catalysis and the transition state theory of reaction rates: Transition state analogs. Cold Spring Harb Symp Quant Biol 36:45-51.
22. Lorenzetti R, Monaco L, Sidoli A, Sorrentino V (1984): Soria-M fibroblast interferon from a human amniotic cell line: A strategy for rapid molecular cloning. Microbiologica 7:229-242.
23. Mattern KA, Humbel BM, Muijsers AO, de Jong L, and van Driel R (1996): hnRNP proteins and B23 are the major proteins of the internal nuclear matrix of HeLa S3 cells. J Cell Biochem 62:275-289.
24. Matunis MJ, Xing J, Dreyfuss G (1994): The hnRNP F protein: Unique primary structure, nucleic acid-binding properties, and subcellular localization. Nucleic Acids Res 22:1059-1067.
25. Moll R, Achtstätter T, Becht E, Balcarova-Ständer J, Ittensohn M, Franke WW (1988): Cytokeratins in normal and malignant transitional epithelium. Am J Pathol 132:123-144.
26. Nickerson JA, Krochmalnic G, Wan KM, Penman S (1989): Chromatin architecture and nuclear RNA. Proc Natl Acad Sci U S A 86:177-181.
27. Penman S (1995): Rethinking cell structure. Proc Natl Acad Sci U S A 92:5251-5257.
28. Piñol-Roma S, Swanson MS, Gall JG, Dreyfuss G (1989): A novel heterogeneous nuclear RNP protein with a unique distribution on nascent transcripts. J Cell Biol 109:2575-2587.
29. Puskas RS, Manley NR, Wallace DM, Berger SL (1982): Effect of ribonucleoside-vanadyl complexes on enzyme-catalyzed reactions central to recombinant deoxyribonucleic acid technology. Biochemistry 21:4602-4608.
30. Stuurman N, De Jong L, Van Driel R (1992): Nuclear frameworks: Concepts and operational definitions. Cell Biol Int Rep 16:837-852.
31. Sutoh K, Yamamoto K, Wakabayashi T (1986): Electron microscopic visualization of the ATPase site of myosin by photoaffinity labeling with a biotinylated photoreactive ADP analog. Proc Natl Acad Sci U S A 83:212-216.
32. Wray W, Boulikas T, Wray V, Hancock R (1981): Silver staining of proteins in polyacrylamide gels. Anal Biochem 118:197-203.