Additivity of interactions of zinc finger motifs in specific recognition of RNA

Journal of Biochemistry

Volumn 131, Issue 4, 2002, Pages 571-578

  Giel Pietraszuk, Małgorzata ^a   Barciszewska, Mirosława Z ^a  

^a INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

Additivity of interaction; RNA protein interaction; Zinc finger

Indexed keywords

HYDROXYL RADICAL; RIBONUCLEASE; RNA; RNA 5S; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IIIA; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; DNA FOOTPRINTING; LUPIN; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NONHUMAN; PLANT; PROTEIN BINDING; PROTEIN RNA BINDING; PROTEIN STRUCTURE; RNA STRUCTURE; STRUCTURE ACTIVITY RELATION; XENOPUS LAEVIS; ZINC FINGER MOTIF;

STAPHYLOCOCCUS PHAGE 3A; XENOPUS; XENOPUS LAEVIS;

EID: 0036241117     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a003136     Document Type: Article

References (48)

1. RNA recognition: A family matter?
2. Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes
3. Specific interaction of purified transcription factor with an internal control region of 5S RNA genes
4. A specific transcription factor that bind either the 5S rRNA gene or 5S RNA
5. Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
6. Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
7. Zif268 protein-DNA complex at 1.6A: A model system for understanding zinc-DNA interactions
8. Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA
9. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: Determinants of affinity and sequence specificity
10. Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
11. Mapping of the sites of protection on a 5S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction
12. Mapping functional regions of transcription factor TFIIIA
13. Mode of interaction of the zinc finger protein TFIIIA with a 5S RNA gene of Xenopus
14. Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5S RNA gene complex
15. Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5S RNA gene
16. Structure of the TFIIIA-5 S DNA complex
17. The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA
18. Multiconnection of identical zinc finger: Implication for DNA binding affinity and unit modulation of the three zinc finger domain
19. NMR and molecular dynamic studies of the hydration of a zinc finger-DNA complex
20. RNA and DNA binding zinc fingers in Xenopus TFIIIA
21. Phage display of RNA binding zinc fingers from transcription factor IIIA
22. Functional interactions between the zinc fingers of Xenopus transcription factor IIIA during 5S rRNA binding
23. 5S ribosomal RNA Data Bank
24. Biochemical and NMR spectroscopy evidence for a new tertiary A-U base pair in lupin ribosomal 5 S RNA structure
25. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
26. Structural determinants in 5S RNA and TFIIIA for 7S RNP formation
27. Interaction of the RNA binding fingers of Xenopus transcription factor IIIA with specific regions of 5S ribosomal RNA
28. Molecular basis for specific recognition of both RNA and DNA by zinc finger protein
29. Contribution of individual amino acids to the nucleic acid binding activities of the Xenopus zinc finger proteins TFIIIIA and p43
30. Dissection of the DNA-binding domain of Xenopus laevis TFIIIA. Quantitative DNase I footprinting analysis of specific complexes between a 5 S RNA gene fragment and N-terminal fragments of TFIIIA containing three, four or five zinc-finger domains
31. Sequence-specific binding of the N-terminal three-finger fragment of Xenopus transcription factor IIIA to the internal control region of a 5S RNA gene
32. The primary structure of yellow lupin seeds 5S ribosomal RNA
33. Hydroxyl radical footprinting: A high-resolution method for mapping protein-DNA contacts
34. Hydroxyl radical "foot-printing" of RNA: Application to pre-mRNA splicing complexes
35. Defining the inside and outside of a catalytic RNA molecule
36. Hydroxyl radical "foot-printing": High-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein
37. CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease
38. Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro
39. EBNA-1, the major nuclear antigen of Epstein-Barr virus, resembles 'RGG' RNA binding proteins
40. DNA recognition code of transcription factors in the helix-turn-helix, probe helix, hormone receptor and zinc finger families
41. Interaction of higher plant ribosomal 5S RNAs with Xenopus laevis transcriptional factor IIIA
42. Nuclease properties of putative zinc finger
43. The use of chemical nucleases to analyze RNA-protein interactions. The TFIIIA-5 S rRNA complex
44. Specific protein-nucleic acid recognition in ribonuclease T1-2′-guanylic acid complex: An X-ray study
45. On the recognition of helical RNA by cobra venom V1 nuclease
46. Identification of a minimal domain of 5 S ribosomal RNA sufficient for high affinity interactions with the RNA-specific zinc fingers of transcription factor IIIA
47. Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes
48. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA