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Volumn 291, Issue 3, 1999, Pages 549-560

Identification of a minimal domain of 5 S ribosomal RNA sufficient for high affinity interactions with the RNA-specific zinc fingers of transcription factor IIIA

Author keywords

5 S RNA; TFIIIA; Zinc finger proteins

Indexed keywords

DNA; RNA 5S; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN;

EID: 0033588354     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.2985     Document Type: Article
Times cited : (18)

References (49)
  • 2
    • 0024577464 scopus 로고
    • A difference in the importance of bulged nucleotides and their parent base-pair in the binding of transcription factor IIIA to Xenopus 5 S RNA and 5 S RNA genes
    • Baudin F., Romaniuk P. J. A difference in the importance of bulged nucleotides and their parent base-pair in the binding of transcription factor IIIA to Xenopus 5 S RNA and 5 S RNA genes. Nucl. Acids Res. 17:1989;2043-2056.
    • (1989) Nucl. Acids Res. , vol.17 , pp. 2043-2056
    • Baudin, F.1    Romaniuk, P.J.2
  • 3
    • 0025981726 scopus 로고
    • Involvement of hinge nucleotides of Xenopus laevis 5 S rRNA in the RNA structural organization and in the binding of transcription factor TFIIIA
    • Baudin F., Romaniuk P. J., Romby P., Brunel C., Westhof E., Ehresmann B., Ehresmann C. Involvement of hinge nucleotides of Xenopus laevis 5 S rRNA in the RNA structural organization and in the binding of transcription factor TFIIIA. J. Mol. Biol. 218:1991;69-81.
    • (1991) J. Mol. Biol. , vol.218 , pp. 69-81
    • Baudin, F.1    Romaniuk, P.J.2    Romby, P.3    Brunel, C.4    Westhof, E.5    Ehresmann, B.6    Ehresmann, C.7
  • 4
    • 0027268413 scopus 로고
    • Proteolytic footprinting of transcription factor TFIIIA reveals different binding sites for 5 S RNA and 5 S DNA
    • Bogenhagen D. F. Proteolytic footprinting of transcription factor TFIIIA reveals different binding sites for 5 S RNA and 5 S DNA. Mol. Cell. Biol. 13:1993;5149-5159.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 5149-5159
    • Bogenhagen, D.F.1
  • 5
    • 0027327521 scopus 로고
    • A role in DNA binding for the linker sequences of the first three zinc fingers of TFIIIA
    • Choo Y., Klug A. A role in DNA binding for the linker sequences of the first three zinc fingers of TFIIIA. Nucl. Acids Res. 21:1993;3341-3346.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3341-3346
    • Choo, Y.1    Klug, A.2
  • 6
    • 0028046895 scopus 로고
    • Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
    • Choo Y., Klug A. Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl Acad. Sci. USA. 91:1994a;11168-11172.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11168-11172
    • Choo, Y.1    Klug, A.2
  • 7
    • 0027994717 scopus 로고
    • Toward a code for the interactions of zinc fingers with DNA: Selection of randomized fingers displayed on phage
    • Choo Y., Klug A. Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage. Proc. Natl Acad. Sci. USA. 91:1994b;11163-11167.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11163-11167
    • Choo, Y.1    Klug, A.2
  • 8
    • 0026469990 scopus 로고
    • Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5 S RNA gene complex
    • Clemens K. R., Liao X. B., Wolf V., Wright P. E., Gottesfeld J. M. Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5 S RNA gene complex. Proc. Natl Acad. Sci. USA. 89:1992;10822-10826.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 10822-10826
    • Clemens, K.R.1    Liao, X.B.2    Wolf, V.3    Wright, P.E.4    Gottesfeld, J.M.5
  • 10
    • 0028143727 scopus 로고
    • Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding
    • Clemens K. R., Zhang P., Liao X., McBryant S. J., Wright P. E., Gottesfeld J. M. Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding. J. Mol. Biol. 244:1994;23-35.
    • (1994) J. Mol. Biol. , vol.244 , pp. 23-35
    • Clemens, K.R.1    Zhang, P.2    Liao, X.3    McBryant, S.J.4    Wright, P.E.5    Gottesfeld, J.M.6
  • 11
    • 0026716289 scopus 로고
    • Differential binding of zinc fingers from Xenopus TFIIIA and p43 to 5 S RNA and the 5 S RNA gene
    • Darby M. K., Joho K. E. Differential binding of zinc fingers from Xenopus TFIIIA and p43 to 5 S RNA and the 5 S RNA gene. Mol. Cell. Biol. 12:1992;3155-3164.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 3155-3164
    • Darby, M.K.1    Joho, K.E.2
  • 12
    • 0018862597 scopus 로고
    • Specific interaction of a purified transcription factor with an internal control region of 5 S RNA genes
    • Engelke D. R., Ng S.-Y., Shastry B. S., Roeder R. G. Specific interaction of a purified transcription factor with an internal control region of 5 S RNA genes. Cell. 19:1980;717-728.
    • (1980) Cell , vol.19 , pp. 717-728
    • Engelke, D.R.1    Ng, S.-Y.2    Shastry, B.S.3    Roeder, R.G.4
  • 13
    • 0030892127 scopus 로고    scopus 로고
    • Phage display of RNA binding zinc fingers from transcription factor IIIA
    • Friesen W. J., Darby M. K. Phage display of RNA binding zinc fingers from transcription factor IIIA. J. Biol. Chem. 272:1997;10994-10997.
    • (1997) J. Biol. Chem. , vol.272 , pp. 10994-10997
    • Friesen, W.J.1    Darby, M.K.2
  • 14
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • Gill S. C., von Hippel P. H. Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem. 182:1989;319-326.
    • (1989) Anal. Biochem. , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 15
    • 0021710076 scopus 로고
    • Xenopus 5 S gene transcription factor, TFIIIA: Characterization of a cDNA clone and measurement of RNA levels throughout development
    • Ginsberg A. M., King B. O., Roeder R. G. Xenopus 5 S gene transcription factor, TFIIIA: characterization of a cDNA clone and measurement of RNA levels throughout development. Cell. 39:1984;479-489.
    • (1984) Cell , vol.39 , pp. 479-489
    • Ginsberg, A.M.1    King, B.O.2    Roeder, R.G.3
  • 16
    • 0026495867 scopus 로고
    • Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5 S RNA gene
    • Hayes J. J., Clemens K. R. Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5 S RNA gene. Biochemistry. 31:1992;11600-11605.
    • (1992) Biochemistry , vol.31 , pp. 11600-11605
    • Hayes, J.J.1    Clemens, K.R.2
  • 17
    • 0026760950 scopus 로고
    • Structure of the TFIIIA-5 S DNA complex
    • Hayes J. J., Tullius T. D. Structure of the TFIIIA-5 S DNA complex. J. Mol. Biol. 227:1992;407-417.
    • (1992) J. Mol. Biol. , vol.227 , pp. 407-417
    • Hayes, J.J.1    Tullius, T.D.2
  • 18
    • 0024515156 scopus 로고
    • A protein-protein interaction is essential for stable complex formation on a 5 S RNA gene
    • Hayes J., Tullius T., Wolffe A. P. A protein-protein interaction is essential for stable complex formation on a 5 S RNA gene. J. Biol. Chem. 264:1989;6009-6012.
    • (1989) J. Biol. Chem. , vol.264 , pp. 6009-6012
    • Hayes, J.1    Tullius, T.2    Wolffe, A.P.3
  • 19
    • 0019206283 scopus 로고
    • Association of a 5 S gene transcription factor with 5 S RNA and altered levels of the factor during cell differentiation
    • Honda B. M., Roeder R. G. Association of a 5 S gene transcription factor with 5 S RNA and altered levels of the factor during cell differentiation. Cell. 22:1980;119-126.
    • (1980) Cell , vol.22 , pp. 119-126
    • Honda, B.M.1    Roeder, R.G.2
  • 20
    • 0025305594 scopus 로고
    • A finger protein structurally similar to TFIIIA that binds exclusively to 5 S RNA in Xenopus
    • Joho K. E., Darby M. K., Crawford E. T., Brown D. D. A finger protein structurally similar to TFIIIA that binds exclusively to 5 S RNA in Xenopus. Cell. 61:1990;293-300.
    • (1990) Cell , vol.61 , pp. 293-300
    • Joho, K.E.1    Darby, M.K.2    Crawford, E.T.3    Brown, D.D.4
  • 21
    • 0028866812 scopus 로고
    • Solution structure of the CUUG hairpin loop: A novel RNA
    • Jucker F. M., Pardi A. Solution structure of the CUUG hairpin loop: a novel RNA. Biochemistry. 34:1995;14416-14427.
    • (1995) Biochemistry , vol.34 , pp. 14416-14427
    • Jucker, F.M.1    Pardi, A.2
  • 22
    • 0030752462 scopus 로고    scopus 로고
    • Energetically unfavorable interactions among the zinc fingers of transcription factor IIIA when bound to the 5 S rRNA gene
    • Kehres D. G., Subramanyan G. S., Hung V. S., Rogers G. W. J., Setzer D. R. Energetically unfavorable interactions among the zinc fingers of transcription factor IIIA when bound to the 5 S rRNA gene. J. Biol. Chem. 272:1997;20152-20161.
    • (1997) J. Biol. Chem. , vol.272 , pp. 20152-20161
    • Kehres, D.G.1    Subramanyan, G.S.2    Hung, V.S.3    Rogers, G.W.J.4    Setzer, D.R.5
  • 23
    • 0027436138 scopus 로고
    • A position-dependent transcription-activating domainin TFIIIA
    • Mao X., Darby M. K. A position-dependent transcription-activating domainin TFIIIA. Mol. Cell. Biol. 13:1993;7496-7506.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 7496-7506
    • Mao, X.1    Darby, M.K.2
  • 25
    • 0029883329 scopus 로고    scopus 로고
    • Assessment of major and minor groove DNA interactions by the zinc fingers of Xenopus transcription factor IIIA
    • McBryant S. J., Gedulin B., Clemens K. R., Wright P. E., Gottesfeld J. M. Assessment of major and minor groove DNA interactions by the zinc fingers of Xenopus transcription factor IIIA. Nucl. Acids Res. 24:1996;2567-2574.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 2567-2574
    • McBryant, S.J.1    Gedulin, B.2    Clemens, K.R.3    Wright, P.E.4    Gottesfeld, J.M.5
  • 26
    • 0040215628 scopus 로고
    • Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes
    • Miller J., McLachlan A. D., Klug A. Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes. EMBO J. 4:1985;1609-1614.
    • (1985) EMBO J. , vol.4 , pp. 1609-1614
    • Miller, J.1    McLachlan, A.D.2    Klug, A.3
  • 27
    • 0029129682 scopus 로고
    • Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: Thermodynamic and spectroscopic applications
    • Molinaro M., Tinoco I. Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: thermodynamic and spectroscopic applications. Nucl. Acids Res. 23:1995;3056-3063.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 3056-3063
    • Molinaro, M.1    Tinoco, I.2
  • 28
    • 0031566037 scopus 로고    scopus 로고
    • Importance of minor groove binding zinc fingers within the transcription factor IIIA DNA complex
    • Neely L., Trauger J. W., Baird E. E., Dervan P. B., Gottesfeld J. M. Importance of minor groove binding zinc fingers within the transcription factor IIIA DNA complex. J. Mol. Biol. 274:1997;439-445.
    • (1997) J. Mol. Biol. , vol.274 , pp. 439-445
    • Neely, L.1    Trauger, J.W.2    Baird, E.E.3    Dervan, P.B.4    Gottesfeld, J.M.5
  • 29
    • 0032539846 scopus 로고    scopus 로고
    • Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
    • Nolte R. T., Conlin R. M., Harrison S. C., Brown R. S. Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex. Proc. Natl Acad. Sci. USA. 95:1998;2938-2943.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 2938-2943
    • Nolte, R.T.1    Conlin, R.M.2    Harrison, S.C.3    Brown, R.S.4
  • 30
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
    • Pavletich N. P., Pabo C. O. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å Science. 252:1991;809-817.
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 31
    • 0027423758 scopus 로고
    • Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
    • Pavletich N. P., Pabo C. O. Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. Science. 261:1993;1701-1707.
    • (1993) Science , vol.261 , pp. 1701-1707
    • Pavletich, N.P.1    Pabo, C.O.2
  • 32
    • 0010182724 scopus 로고
    • A specific transcription factor that can bind either the 5 S RNA gene or 5 S RNA
    • Pelham H. R., Brown D. D. A specific transcription factor that can bind either the 5 S RNA gene or 5 S RNA. Proc. Natl Acad. Sci. USA. 77:1980;4170-4174.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 4170-4174
    • Pelham, H.R.1    Brown, D.D.2
  • 33
    • 0030580618 scopus 로고    scopus 로고
    • Analysis of the binding of Xenopus transcription factor IIIA to oocyte 5 S rRNA and to the 5 S rRNA gene
    • Rawlings S. L., Matt G. D., Huber P. W. Analysis of the binding of Xenopus transcription factor IIIA to oocyte 5 S rRNA and to the 5 S rRNA gene. J. Biol. Chem. 271:1996;869-877.
    • (1996) J. Biol. Chem. , vol.271 , pp. 869-877
    • Rawlings, S.L.1    Matt, G.D.2    Huber, P.W.3
  • 34
    • 0028328872 scopus 로고
    • Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
    • Rebar E. J., Pabo C. O. Zinc finger phage: affinity selection of fingers with new DNA-binding specificities. Science. 263:1994;671-673.
    • (1994) Science , vol.263 , pp. 671-673
    • Rebar, E.J.1    Pabo, C.O.2
  • 35
    • 0024583567 scopus 로고
    • The role of highly conserved single-stranded nucleotides of Xenopus 5 S RNA in the binding of transcription factor IIIA
    • Romaniuk P. J. The role of highly conserved single-stranded nucleotides of Xenopus 5 S RNA in the binding of transcription factor IIIA. Biochemistry. 28:1989;1388-1395.
    • (1989) Biochemistry , vol.28 , pp. 1388-1395
    • Romaniuk, P.J.1
  • 36
    • 0025008425 scopus 로고
    • Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5 S RNA gene
    • Romaniuk P. J. Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5 S RNA gene. J. Biol. Chem. 265:1990;17593-17600.
    • (1990) J. Biol. Chem. , vol.265 , pp. 17593-17600
    • Romaniuk, P.J.1
  • 37
    • 0024296422 scopus 로고
    • A comparison of the solution structures and conformational properties of the somatic and oocyte 5 S rRNAs of Xenopus laevis
    • Romaniuk P. J., deStevenson I. L., Ehresmann C., Romby P., Ehresmann B. A comparison of the solution structures and conformational properties of the somatic and oocyte 5 S rRNAs of Xenopus laevis. Nucl. Acids Res. 16:1988;2295-2312.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 2295-2312
    • Romaniuk, P.J.1    Destevenson, I.L.2    Ehresmann, C.3    Romby, P.4    Ehresmann, B.5
  • 38
    • 0029908877 scopus 로고    scopus 로고
    • Functional interactions between the zinc fingers of Xenopus transcription factor IIIA during 5 S RNA binding
    • Setzer D. R., Menezes S. R., Del Rio S., Hung V. S., Subramanyan G. Functional interactions between the zinc fingers of Xenopus transcription factor IIIA during 5 S RNA binding. RNA. 2:1996;1254-1269.
    • (1996) RNA , vol.2 , pp. 1254-1269
    • Setzer, D.R.1    Menezes, S.R.2    Del, R.S.3    Hung, V.S.4    Subramanyan, G.5
  • 39
    • 0021176464 scopus 로고
    • Domains of the positive transcription factor specific for the Xenopus 5 S RNA gene
    • Smith D. R., Jackson I. J., Brown D. D. Domains of the positive transcription factor specific for the Xenopus 5 S RNA gene. Cell. 37:1984;645-652.
    • (1984) Cell , vol.37 , pp. 645-652
    • Smith, D.R.1    Jackson, I.J.2    Brown, D.D.3
  • 40
  • 41
    • 0032403853 scopus 로고    scopus 로고
    • Structural determinants in 5 S RNA and TFIIIA for 7 S RNP formation
    • Theunissen O., Rudt F., Pieler T. Structural determinants in 5 S RNA and TFIIIA for 7 S RNP formation. Eur. J. Biochem. 258:1998;758-767.
    • (1998) Eur. J. Biochem. , vol.258 , pp. 758-767
    • Theunissen, O.1    Rudt, F.2    Pieler, T.3
  • 42
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science. 249:1990;505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 44
    • 0027439912 scopus 로고
    • The conformation of loop E of eukaryotic 5 S ribosomal RNA
    • Wimberly B., Varani M. G., Tinoco I. The conformation of loop E of eukaryotic 5 S ribosomal RNA. Biochemistry. 32:1993;1078-1087.
    • (1993) Biochemistry , vol.32 , pp. 1078-1087
    • Wimberly, B.1    Varani, M.G.2    Tinoco, I.3
  • 45
    • 0028888530 scopus 로고
    • Building zinc fingers by selection: Toward a therapeutic application
    • Wu H., Yang W.-P., Barbas C. F. I. Building zinc fingers by selection: toward a therapeutic application. Proc. Natl Acad. Sci. USA. 92:1995;344-348.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 344-348
    • Wu, H.1    Yang, W.-P.2    Barbas, C.F.I.3
  • 46
    • 0031576363 scopus 로고    scopus 로고
    • Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: Determinants of affinity and sequence specificity
    • Wuttke D. S., Foster M. P., Case D. A., Gottesfeld J. M., Wright P. E. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity. J. Mol. Biol. 273:1997;183-206.
    • (1997) J. Mol. Biol. , vol.273 , pp. 183-206
    • Wuttke, D.S.1    Foster, M.P.2    Case, D.A.3    Gottesfeld, J.M.4    Wright, P.E.5
  • 47
    • 0025847109 scopus 로고
    • Mutations in 5 S DNA and 5 S RNA have different effects on the binding of Xenopus transcription factor IIIA
    • You Q., Veldhoen N., Baudin F., Romaniuk P. J. Mutations in 5 S DNA and 5 S RNA have different effects on the binding of Xenopus transcription factor IIIA. Biochemistry. 30:1991;2495-2500.
    • (1991) Biochemistry , vol.30 , pp. 2495-2500
    • You, Q.1    Veldhoen, N.2    Baudin, F.3    Romaniuk, P.J.4
  • 48
    • 0025127670 scopus 로고
    • The effects of disrupting 5 S RNA helical structures on the binding of Xenopus transcription factor IIIA
    • You W., Romaniuk P. J. The effects of disrupting 5 S RNA helical structures on the binding of Xenopus transcription factor IIIA. Nucl. Acids Res. 18:1990;5055-5062.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 5055-5062
    • You, W.1    Romaniuk, P.J.2
  • 49
    • 0028851686 scopus 로고
    • Effects of zinc finger mutations on the nucleic acid binding activities of Xenopus transcription factor IIIA
    • Zang W.-Q., Veldhoen N., Romaniuk P. J. Effects of zinc finger mutations on the nucleic acid binding activities of Xenopus transcription factor IIIA. Biochemistry. 34:1995;15545-15552.
    • (1995) Biochemistry , vol.34 , pp. 15545-15552
    • Zang, W.-Q.1    Veldhoen, N.2    Romaniuk, P.J.3


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