Mining biochemical information: Lessons taught by the ribosome

RNA

Volumn 8, Issue 3, 2002, Pages 279-289

  Whirl Carrillo, Michelle ^a   Gabashvili, Irene S ^a   Bada, Michael ^a   Banatao, D Rey ^a   Altman, Russ B ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

Bacterial ribosome; Cleavage; Crosslinking; Crystal structure; Footprinting; Proximity measures; Ribosomal proteins; Ribosomal RNA

Indexed keywords

RIBOSOME PROTEIN; RIBOSOME RNA;

ARTICLE; BIOCHEMISTRY; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; DNA FOOTPRINTING; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN CROSS LINKING; PROTEIN DEGRADATION; PROTEIN INTERACTION; RIBOSOME;

ALGORITHMS; DATA INTERPRETATION, STATISTICAL; DATABASES, FACTUAL; DNA FOOTPRINTING; HUMANS; MODELS, MOLECULAR; PROTEIN BIOSYNTHESIS; PROTEINS; RIBOSOMES; RNA;

BACTERIA (MICROORGANISMS);

EID: 0036231351     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S135583820202407X     Document Type: Article

References (18)

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2. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
3. A detailed model of the three-dimensional structure of Escherichia coli 16S ribosomal RNA in situ in the 30S subunit
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5. Computational methods for defining the allowed conformational space of 16S rRNA based on chemical footprinting data
6. Quantitative evaluation of the lengths of homobifunctional protein cross-linking used as molecular rulers
7. Mapping the inside of the ribosome with an RNA helical ruler
8. Cross-links between ribosomal proteins of 30S subunits in 70S tight couples and in 30S subunits
9. An investigation of the dynamics of ribosomal protein L9 using heteronuclear NMR relaxation measurements
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12. Reaction of n-ethyl maleimide with ribosomes of Escherichia coli
13. Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
14. Chemical methods for the structural study of the ribosome: Judgment day
15. Identification of protein-protein cross-links within the Escherichia coli ribosome by immunoblotting techniques
16. Structure of the 30S ribosomal subunit
17. Crystal structure of the ribosome at 5.5 Å resolution