Secondary structure and phylogenetic implications of ITS2 in the genus Tricholoma

Journal of Microbiology and Biotechnology

Volumn 12, Issue 1, 2002, Pages 130-136

  Suh, A ^a   Seok Jong, A ^a   Kim, Jong Guk ^a  

^a Kyungpook National University   (South Korea)

Author keywords

Genus Tricholoma; Internal transcribed spacer 2 (ITS2); Phylogenetics; Secondary structure

Indexed keywords

INTERNAL TRANSCRIBED SPACER; NUCLEOTIDE; PYRIMIDINE;

ALGORITHM; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; ENERGY; FUNGUS; GENUS; MOLECULAR EVOLUTION; MOLECULAR MODEL; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; PHYLOGENY; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; TRICHOLOMA;

TRICHOLOMA;

EID: 0036207260     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Levan-producing Bacillus subtilis BS 62 and its phylogeneny based on its 16S rDNA Sequence
2. Phylogenetic analysis of "Volvocacae" for comparative genetic studies
3. Sequence and structure correlation of human ribosomal transcribed spacers
4. Phylogenetic analysis of genus Sporobolomyces based on partial sequences of 26S rDNA
5. Secondary structure model for the ITS-2 precursor rRNA of strongyloid nematodes of equids: Implications for phylogenetic inference
6. Cloning and characterization of the ribosomal RNA genes of the mushroom Tricholoma matsutake
7. Small-subunit ribosomal RNA of an ectomycorrhizal fungus Tricholoma matsutake: Sequence, structure, and phylogenetic analyses
8. Secondary structural and phylogenetic implications of nuclear large subunit ribosomal RNA in the ectomycorrhizal fungus Tricholoma matsutake
9. Rapid and accurate species-specific detection of Phytophthora infestans through analysis of ITS regions in its rDNA
10. Phylogenetic classification of Antrodia and related genera based on ribosomal RNA internal transcribed spacer sequences
11. Isolation of high molecular weight DNA and double-stranded RNAs from fungi
12. Cloning and characterization of the ribosomal RNA gene from Gonyaulax polyedra
13. The phylogenetic relationship of several oscillatorian Cyanobacteria, forming blooms at daecheong reservoirs, based on partial 16S rDNA gene sequences
14. The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants
15. Re-evaluation of the phylogenetic relationship among species of the genus Tricholoma
16. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
17. Conserved secondary structures in the ITS2 of trematode pre-rRNA
18. Nuclear rDNA ITS sequence variation in the trematode genus Echinostoma: An aid to establishing relationships within the 37-collar-spine group
19. Trematode and Monogean rRNA ITS2 secondary structures support a four-domain model
20. Comparative evolutionary analysis of rDNA ITS region in Drosophila
21. Intra-specific heterogeneity of the rDNA internal transcribed spacer in the Simulium damnosum (Diptera: Simuliidae) complex
22. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
23. Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA
24. Evolutionarily conserved structural elements are critical for processing of internal transcribed 2 from Saccharomyces cerevisiae precursor ribosomal RNA
25. Investigation of the validity of species status of Ixodes dammini (Acari: Ixodidae) using rDNA
26. Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA of Saccharomyces cerevisiae
27. Computer prediction of RNA structure