SUPFAM - A database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: Implications for structural genomics and function annotation in genomes

Nucleic Acids Research

Volumn 30, Issue 1, 2002, Pages 289-293

  Pandit, Shashi B ^a   Gosar, Dilip ^a   Abhiman, S ^a,b   Sujatha, S ^a   Dixit, Sayali S ^a,b,c   Mhatre, Natasha S ^a   Sowdhamini, R ^b   Srinivasan, N ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

^c INDIAN INSTITUTE OF TECHNOLOGY BOMBAY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; GENE PRODUCT;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; COMPUTER PROGRAM; GENE FUNCTION; GENE STRUCTURE; GENOME; INTERMETHOD COMPARISON; INTERNET; MEDICAL INFORMATION; MOLECULAR EVOLUTION; MYCOBACTERIUM TUBERCULOSIS; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; PROTEIN STRUCTURE; PROTEIN TARGETING; RELIABILITY; SEQUENCE ALIGNMENT; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; SUPFAM DATABASE; X RAY ANALYSIS;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS;

EID: 0036087098     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.1.289     Document Type: Article

References (19)

1. Mapping the protein universe
2. Expectations of structural genomics
3. Protein structure modeling for structural genomics
4. From structure to function: Approaches and limitations
5. Completeness in structural genomics
6. Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins
7. SCOP: A structural classification of proteins database for the investigation of sequences and structures
8. The PRESAGE database for structural genomics
9. A comparison of sequence and structure of protein domain families as a basis for structural genomics
10. The CATH Dictionary of Homologous Superfamilies (DHS): A consensus approach for identifying distant structural homologues
11. Identification of related proteins on family, superfamily and fold level
12. HOMSTRAD: Adding sequence information to structure-based alignments of homologous protein families
13. PALI: A database of Phylogeny and ALIgnment of homologous protein structures
14. Pfam multiple sequence alignment and HMM-profiles of protein domains
15. The Pfam Protein Families Database
16. IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
17. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
18. Gen THREADER: An efficient and reliable protein fold recognition method for genomic sequences
19. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence