Pattern searches for the identification of putative lipoprotein genes in Gram-positive bacterial genomes

Microbiology

Volumn 148, Issue 7, 2002, Pages 2065-2077

  Sutcliffe, Iain C ^a   Harrington, Dean J ^a  

^a UNIVERSITY OF SUNDERLAND   (United Kingdom)

Author keywords

Bacillus subtilis; Exported proteins; Genomics; Streptococcus pyogenes; YidC

Indexed keywords

LIPOPROTEIN; SIGNAL PEPTIDE;

BACTERIAL GENOME; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; GENOME ANALYSIS; GRAM POSITIVE BACTERIUM; INTERMETHOD COMPARISON; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVIEW; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STREPTOCOCCUS PYOGENES;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); MOLLICUTES; POSIBACTERIA; PROKARYOTA; STREPTOCOCCUS PYOGENES;

EID: 0036066456     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-148-7-2065     Document Type: Review

References (89)

1. Identification and characterization of a novel family of pneumococcal proteins that are protective against sepsis
2. The 18 kDa cytochrome c553 from Heliobacterium gestii: Gene sequence and characterization of the mature protein
3. Three highly homologous membrane-bound lipoproteins participate in oligopeptide transport by the Ami system of the Gram-positive Streptococcus pneumoniae
4. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
5. Structure and mapping of antigenic domains of protein antigen b, a 38,000-molecular weight protein of Mycobacterium tuberculosis
6. A proteomic view of genome-based signal peptide predictions
7. Nucleotide sequence of the 19 kDa antigen gene from Mycobacterium tuberculosis
8. Subunit II of Bacillus subtilis cytochrome c oxidase is a lipoprotein
9. Lipoproteins, structure, function, biosynthesis and model for protein export
10. Bacterial surface proteins recognized by CD4+ T cells during murine infection with Listeria monocytogenes
11. Interactions between mycoplasma lipoproteins and the host immune system
12. Recombinant hyaluronate associated protein as a protective immunogen against Streptococcus equi and Streptococcus zooepidemicus challenge in mice
13. TopPred II: An improved software for membrane protein structure predictions
14. A new family of high-affinity ABC manganese and zinc permeases
15. Processing and surface presentation of the Mycoplasma hyorhinis variant lipoprotein VlpC
16. Identification of Mycoplasma membrane proteins by systematic TnphoA mutagenesis of a recombinant library
17. Molecular cloning of a 32-kilodalton lipoprotein component of a novel iron-regulated Staphylococcus epidermidis ABC transporter
18. Sortase, a universal target for therapeutic agents against Gram-positive bacteria?
19. Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The Dense Alignment Surface method
20. KapB is a lipoprotein required for KinB signal transduction and activation of the phosphorelay to sporulation in Bacillus subtilis
21. The permeability of the wall fabric of Escherichia coli and Bacillus subtilis
22. Peptidoglycan as a barrier to transenvelope transport
23. Lipid modification of the Cu,Zn superoxide dismutase from Mycobacterium tuberculosis
24. Different sequence patterns in signal peptides from mycoplasmas, other gram-positive bacteria, and Escherichia coli: A multivariate data analysis
25. Xylose transport by the anaerobic thermophile Thermoanaerobacter ethanolicus and the characterization of a D-xylose-binding protein
26. The D-xylose binding protein, XylF, from Thermoanaerobacter ethanolicus 39E: Cloning, molecular analysis, and expression of the structural gene
27. G activity at an intermediate stage of sporulation
28. The PROSITE database: Its status in 2002
29. Complete genome sequence of an M1 strain of Streptococcus pyogenes
30. Functional and structural genomics using PEDANT
31. Cytochrome-c-551 of the thermophilic bacterium PS3, DNA-sequence and analysis of the mature cytochrome
32. The LppC gene of Streptococcus equisimilis encodes a lipoprotein that is homologous to the e(P4) outer membrane protein from Haemophilus influenzae
33. Alkaline phosphatase reporter transposon for identification of genes encoding secreted proteins in Gram-positive microorganisms
34. Spirochaetal lipoproteins and pathogenesis
35. Lactococcal proteinase maturation protein PrtM is a lipoprotein
36. Characterisation of acid phosphatase activities in the equine pathogen Streptococcus equi
37. Identification of lipoprotein homologues of pneumococcal PsaA in the equine pathogens Streptococcus equi and Streptococcus zooepidemicus
38. Biochemical identification of a lipoprotein with maltose-binding activity in the thermoacidophilic Gram-positive bacterium Alicyclobacillus acidocaldarius
39. TMbase - A database of membrane spanning protein segments
40. Maltose and maltodextrin transport in the thermoacidophilic Gram-positive bacterium Alicyclobacillus acidocaldarius is mediated by a high-affinity transport system that includes a maltose binding protein tolerant to low pH
41. Mechanism of action of globomycin
42. Improved pattern for genome-based screening identifies novel cell wall-attached proteins in gram-positive bacteria
43. Identification and characterization of a Streptococcus pyogenes ABC transporter with multiple specificity for metal cations
44. A binding-lipoprotein-dependent oligopeptide transport system in Streptococcus gordonii essential for uptake of hexa- and heptapeptides
45. Lipoprotein from the osmoregulated ABC transport system OpuA of Bacillus subtilis: Purification of the glycine betaine binding protein and characterization of a functional lipidless mutant
46. Distinctive properties of signal sequences from bacterial lipoproteins
47. The PrsA lipoprotein is essential for protein secretion in Bacillus subtilis and sets a limit for high-level secretion
48. Lipid modification of prelipoproteins is dispensable for growth but essential for efficient protein secretion in Bacillus subtilis: Characterization of the lgt gene
49. Thiol-disulfide exchange is involved in the catalytic mechanism of peptide methionine sulfoxide reductase
50. YidC/ Oxa1p/Alb3: Evolutionarily conserved mediators of membrane protein assembly
51. Cytoplasmic membrane lipoprotein LppC of Streptococcus equisimilis functions as an acid phosphatase
52. Nucleotide sequence analysis and serologic characterization of a 27-kilodalton Mycobacterium intracellulare lipoprotein
53. Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope
54. Characterization of the molybdate transport system ModABC of Staphylococcus carnosus
55. Prediction of signal peptides and signal anchors by a hidden Markov model
56. Membrane-bound penicillinases in gram-positive bacteria
57. Beta-lactamase-III of Bacillus cereus 569 - Membrane lipoprotein and secreted protein
58. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
59. Isoprenoid modification of proteins distinct from membrane acyl proteins in the prokaryote Acholeplasma laidlawii
60. Selective acylation of membrane-proteins in Acholeplasma laidlawii
61. The putative proteinase maturation protein A of Streptococcus pneumoniae is a conserved surface protein with potential to elicit protective immune responses
62. Differential protein expression in phenotypic variants of Streptococcus pneumoniae
63. Streptomyces chrysomallus FKBP-33 is a novel immunophilin consisting of 2 FK506 binding domains: Its gene is transcriptionally coupled to the FKBP-12 gene
64. Lipid modification of prelipoproteins is dispensable for growth in vitro but essential for virulence in Streptococcus pneumoniae
65. The group A streptococcal dipeptide permease (Dpp) is involved in the uptake of essential amino acids and affects the expression of cysteine protease
66. Molecular characterization of group A streptococcal (GAS) oligopeptide permease (Opp) and its effect on cysteine protease production
67. 1-type ATPase of the bacterium Mycoplasma pneumoniae is a lipoprotein
68. Structure-function relationship of bacterial prolipoprotein diacylglyceryl transferase: Functionally significant conserved regions
69. Molecular biology and pathogenicity of mycoplasmas
70. P48 major surface antigen of Mycoplasma agalactiae is homologous to a MALP product of Mycoplasma fermentans and belongs to a selected family of bacterial lipoproteins
71. A new family of peptidyl-prolyl isomerases
72. Cytochrome c oxidase contains an extra charged amino acid cluster in the new type of respiratory chain in the amino-acid-producing Gram-positive bacterium Corynebacterium glutamicum
73. Bacterial prolipoprotein signal peptidase
74. Modification of bacterial lipoproteins
75. A lipid-anchored binding protein is a component of an ATP-dependent cellobiose/cellotriose-transport system from the cellulose degrader Streptomyces reticuli
76. Lipoproteins of Gram-positive bacteria
77. MsmE, a lipoprotein involved in sugar transport in Streptococcus mutans
78. Novel laminin-binding protein of Streptococcus pyogenes, Lbp, is involved in adhesion to epithelial cells
79. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
80. The role of lipoprotein processing by signal peptidase II in the Gram-positive eubacterium Bacillus subtilis: Signal peptidase II is required for the efficient secretion of alpha-amylase, a non-lipoprotein
81. The potential active site of the lipoprotein-specific (type II) signal peptidase of Bacillus subtilis
82. Signal peptide-dependent protein transport in Bacillus subtilis: A genome-based survey of the secretome
83. The BspA locus of Lactobacillus fermentum BR11 encodes an L-cystine uptake system
84. The structure of signal peptides from bacterial lipoproteins
85. Characterisation of a lipoprotein in Mycobacterium bovis (BCG) with sequence similarity to the secreted protein MPB70
86. Cloning and nucleotide sequence of the signal peptidase II (Lsp) gene from Staphylococcus carnosus
87. Phylogenetic and structural analyses of the oxa1 family of protein translocases
88. Lipoprotein antigens of Mycobacterium tuberculosis
89. Nucleotide sequence of the Staphylococcus aureus signal peptidase II (Lsp) gene