-
1
-
-
0027265713
-
The role of turns in the structure of an alpha-helical protein
-
Brunet, A.P.; Huang, E.S.; Huffine, M.E.; Loeb, J.E.; Robert, J.W.; Hecht, M.H. The role of turns in the structure of an alpha-helical protein. Nature 1993, 364, 355-358.
-
(1993)
Nature
, vol.364
, pp. 355-358
-
-
Brunet, A.P.1
Huang, E.S.2
Huffine, M.E.3
Loeb, J.E.4
Robert, J.W.5
Hecht, M.H.6
-
2
-
-
0030062459
-
Amino acid substitutions in a surface turn modulate protein stability
-
Predki, P.F.; Agrawal, V.; Brunger, A.T.; Regan, L. Amino acid substitutions in a surface turn modulate protein stability. Nat. Struct. Biol. 1996, 3, 54-58.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 54-58
-
-
Predki, P.F.1
Agrawal, V.2
Brunger, A.T.3
Regan, L.4
-
3
-
-
0033548061
-
Using loop length variants to dissect the folding pathway of a four-helix-bundle protein
-
Nagi, A.D.; Anderson, K.S.; Regan, L. Using loop length variants to dissect the folding pathway of a four-helix-bundle protein. J. Mol. Biol. 1999, 286, 257-265.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 257-265
-
-
Nagi, A.D.1
Anderson, K.S.2
Regan, L.3
-
4
-
-
0029877554
-
Sequence replacements in the central beta-turn of plastocyanin
-
Ybe, J.; Hecht, M. Sequence replacements in the central beta-turn of plastocyanin. Protein Sci. 1996, 5, 814-824.
-
(1996)
Protein Sci.
, vol.5
, pp. 814-824
-
-
Ybe, J.1
Hecht, M.2
-
5
-
-
0031825181
-
Obligatory steps in protein folding and the conformational diversity of the transition state
-
Martinez, J.C.; Pisabarro, M.T.; Serrano, L. Obligatory steps in protein folding and the conformational diversity of the transition state. Nat. Struct. Biol. 1998, 5, 721-729.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 721-729
-
-
Martinez, J.C.1
Pisabarro, M.T.2
Serrano, L.3
-
6
-
-
0032469297
-
Turn scanning by site-directed mutagenesis: Application to the protein folding problem using the intestinal fatty acid binding protein
-
Kim, K.; Frieden, C. Turn scanning by site-directed mutagenesis: Application to the protein folding problem using the intestinal fatty acid binding protein. Protein Sci. 1998, 7, 1821-1828.
-
(1998)
Protein Sci.
, vol.7
, pp. 1821-1828
-
-
Kim, K.1
Frieden, C.2
-
7
-
-
0029926618
-
In vitro evolution of thermodynamically stable turns
-
Zhou, H.; Hoess, R.H.; DeGrado, W.F. In vitro evolution of thermodynamically stable turns. Nat. Struct. Biol. 1996, 3, 446-451.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 446-451
-
-
Zhou, H.1
Hoess, R.H.2
DeGrado, W.F.3
-
8
-
-
0031565981
-
Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein
-
Gu, H.D.; Kim, D.; Baker, D. Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein. J. Mol. Biol. 1997, 274, 588-596.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 588-596
-
-
Gu, H.D.1
Kim, D.2
Baker, D.3
-
9
-
-
0030020571
-
Are turns required for the folding of ribonuclease T1
-
Garrett, J.B.; Mullins, L.S.; Raushel, F.M. Are turns required for the folding of ribonuclease T1. Protein Sci. 1996, 5, 204-211.
-
(1996)
Protein Sci.
, vol.5
, pp. 204-211
-
-
Garrett, J.B.1
Mullins, L.S.2
Raushel, F.M.3
-
10
-
-
0034713833
-
Role of amino acid residues at turns in the conformational stability and folding of human lysozyme
-
Takano, K.; Yamagata, Y.; Yutani, K. Role of amino acid residues at turns in the conformational stability and folding of human lysozyme. Biochemistry 2000, 39, 8655-8665.
-
(2000)
Biochemistry
, vol.39
, pp. 8655-8665
-
-
Takano, K.1
Yamagata, Y.2
Yutani, K.3
-
11
-
-
0022965255
-
Stabilization of λ repressor against thermal denaturation by site-directed Gly-Ala changes in α-helix 3
-
Hecht, M.H.; Sturtevant, J.M.; Sauer, R.T. Stabilization of λ repressor against thermal denaturation by site-directed Gly-Ala changes in α-helix 3. Proteins 1986, 1, 43-46.
-
(1986)
Proteins
, vol.1
, pp. 43-46
-
-
Hecht, M.H.1
Sturtevant, J.M.2
Sauer, R.T.3
-
12
-
-
0026955827
-
Analysis of the effectiveness of proline substitutions and glycine replacements in increasing the stability of phage T4 lysozyme
-
Nicholson, H.; Tronrud, D.E.; Becktel, W.J.; Matthews, B.W. Analysis of the effectiveness of proline substitutions and glycine replacements in increasing the stability of phage T4 lysozyme. Biopolymers 1992, 32, 1431-1441.
-
(1992)
Biopolymers
, vol.32
, pp. 1431-1441
-
-
Nicholson, H.1
Tronrud, D.E.2
Becktel, W.J.3
Matthews, B.W.4
-
13
-
-
0014347799
-
Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units
-
Venkatachalam, C.M. Stereochemical criteria for polypeptides and proteins. V. conformation of a system of three linked peptide units. Biopolymers 1968, 6, 1425-1436.
-
(1968)
Biopolymers
, vol.6
, pp. 1425-1436
-
-
Venkatachalam, C.M.1
-
14
-
-
0015930720
-
Chain reversals in proteins
-
Lewis, P.N.; Momany, F.A.; Scheraga, H.A. Chain reversals in proteins. Biochim. Biophys. Acta 1973, 303, 211-229.
-
(1973)
Biochim. Biophys. Acta
, vol.303
, pp. 211-229
-
-
Lewis, P.N.1
Momany, F.A.2
Scheraga, H.A.3
-
15
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson, J.S. The anatomy and taxonomy of protein structure. Adv. Protein Chem. 1981, 34, 167-339.
-
(1981)
Adv. Protein Chem.
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
16
-
-
0024279235
-
Analysis and prediction of the different types of β-turn in proteins
-
Wilmot, C.M.; Thornton, J.M. Analysis and prediction of the different types of β-turn in proteins. J. Mol. Biol. 1988, 203, 221-232.
-
(1988)
J. Mol. Biol.
, vol.203
, pp. 221-232
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
17
-
-
0015987426
-
Prediction of protein conformation
-
Chou, P.Y.; Fasman, G.D. Prediction of protein conformation. Biochemistry 1974, 13, 222-245.
-
(1974)
Biochemistry
, vol.13
, pp. 222-245
-
-
Chou, P.Y.1
Fasman, G.D.2
-
18
-
-
0015530828
-
Protein folding
-
Kuntz, I.D. Protein folding. J. Am. Chem. Soc. 1972, 94, 4009-4012.
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 4009-4012
-
-
Kuntz, I.D.1
-
19
-
-
0023048287
-
Turn prediction in proteins using a pattern-matching approach
-
Cohen, F.E.; Abarbanel, R.M.; Kuntz, I.D.; Fletterick, R.J. Turn prediction in proteins using a pattern-matching approach. Biochemistry 1986, 25, 266-275.
-
(1986)
Biochemistry
, vol.25
, pp. 266-275
-
-
Cohen, F.E.1
Abarbanel, R.M.2
Kuntz, I.D.3
Fletterick, R.J.4
-
20
-
-
0030963006
-
Prediction of β-turns
-
Chou, K.C. Prediction of β-turns. J. Peptide Res. 1997, 49, 120-144.
-
(1997)
J. Peptide Res.
, vol.49
, pp. 120-144
-
-
Chou, K.C.1
-
21
-
-
0031149431
-
Prediction of β-turns in proteins by 1-4 and 2-3 correlation model
-
Zhang, C.T.; Chou, K.C. Prediction of β-turns in proteins by 1-4 and 2-3 correlation model. Biopolymers 1997, 41, 673-702.
-
(1997)
Biopolymers
, vol.41
, pp. 673-702
-
-
Zhang, C.T.1
Chou, K.C.2
-
22
-
-
0031777347
-
Prediction of β-turns
-
Cai, Y.D.; Yu, H.; Chou, K.C. Prediction of β-turns. J. Protein Chem. 1998, 17, 363-376.
-
(1998)
J. Protein Chem.
, vol.17
, pp. 363-376
-
-
Cai, Y.D.1
Yu, H.2
Chou, K.C.3
-
23
-
-
0034327349
-
Prediction of tight turns and their types in proteins
-
Chou, K.C. Prediction of tight turns and their types in proteins. Anal. Biochem. 2000, 286, 1-16.
-
(2000)
Anal. Biochem.
, vol.286
, pp. 1-16
-
-
Chou, K.C.1
-
24
-
-
0028181441
-
Hidden Markov models in computational biology: Applications to protein modeling
-
Krogh, A.; Brown, M.; Mian, S.; Sjölander, K.; Haussler, D. Hidden Markov models in computational biology: Applications to protein modeling. J. Mol. Biol. 1994, 235, 1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, S.3
Sjölander, K.4
Haussler, D.5
-
25
-
-
0029056051
-
Detection of new genes in bacterial genome using Markov models for three gene classes
-
Borodovsky, M.; McIninch, J.D.; Koonin, E.V.; Rudd, K.E.; Médigue, C.; Danchin, A. Detection of new genes in bacterial genome using Markov models for three gene classes. Nucleic Acids Res. 1995, 23, 3554-3562.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3554-3562
-
-
Borodovsky, M.1
McIninch, J.D.2
Koonin, E.V.3
Rudd, K.E.4
Médigue, C.5
Danchin, A.6
-
26
-
-
0032518163
-
Microbial gene identification using interpolated Markov models
-
Salzberg, S.L.; Delcher, A.L.; Kasif, S.; White, O. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 1998, 26, 544-548.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 544-548
-
-
Salzberg, S.L.1
Delcher, A.L.2
Kasif, S.3
White, O.4
-
27
-
-
0032544103
-
Self-identification of protein-coding regions in microbial genomes
-
Audic, S.; Claverie, J.M. Self-identification of protein-coding regions in microbial genomes. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 10026-10031.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 10026-10031
-
-
Audic, S.1
Claverie, J.M.2
-
28
-
-
0020997912
-
Dictionary of protein secondary structures: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W.; Sander, C. Dictionary of protein secondary structures: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
29
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews, B.W. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta 1975, 405, 442-451.
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
30
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C.; Koetzle, T.F.; Williams, G.J.B.; Meyer, E.F., Jr.; Brice, M.D.; Rodgers, J.R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 1977, 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer E.F., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
31
-
-
0003797553
-
-
The Tripos Associates: St. Louis, MO
-
SYBYL 6.6; The Tripos Associates: St. Louis, MO, 1999.
-
(1999)
SYBYL 6.6
-
-
-
32
-
-
0022510143
-
Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
-
Engelman, D.M.; Steitz, T.A.; Goldman, A. Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu. Rev. Biophys. Biophys. Chem. 1986, 15, 321-353.
-
(1986)
Annu. Rev. Biophys. Biophys. Chem.
, vol.15
, pp. 321-353
-
-
Engelman, D.M.1
Steitz, T.A.2
Goldman, A.3
-
33
-
-
0023803244
-
Predicting the secondary structure of globular proteins using neural network models
-
Qian, N.; Sejnowski, T.J. Predicting the secondary structure of globular proteins using neural network models. J. Mol. Biol. 1988, 202, 865-884.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 865-884
-
-
Qian, N.1
Sejnowski, T.J.2
-
34
-
-
0017873321
-
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
-
Garnier, J.R.; Osguthorpe, D.J.; Robson, B. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol. 1978, 120, 97-120.
-
(1978)
J. Mol. Biol.
, vol.120
, pp. 97-120
-
-
Garnier, J.R.1
Osguthorpe, D.J.2
Robson, B.3
-
35
-
-
0018796254
-
Improvements in the prediction of protein backbone topography by reduction of statistical errors
-
Maxfield, F.R.; Scheraga, H.A. Improvements in the prediction of protein backbone topography by reduction of statistical errors. Biochemistry 1979, 18, 697-704.
-
(1979)
Biochemistry
, vol.18
, pp. 697-704
-
-
Maxfield, F.R.1
Scheraga, H.A.2
-
36
-
-
0003982839
-
-
Genetics Computer Group (GCG): Madison, WI
-
Wisconsin Package Version 10.2; Genetics Computer Group (GCG): Madison, WI.
-
Wisconsin Package Version 10.2
-
-
-
37
-
-
0022701772
-
Using known substructures in protein model building and crystallography
-
Jones, T.A.; Thirup, S. Using known substructures in protein model building and crystallography. EMBO J. 1986, 5, 819-822.
-
(1986)
EMBO J.
, vol.5
, pp. 819-822
-
-
Jones, T.A.1
Thirup, S.2
-
38
-
-
0024527223
-
Modeling the polypeptide backbone with "spare parts" from known protein structures
-
Claessens, M.; Van Gutsem, E.; Lasters, I.; Wodak, S. Modeling the polypeptide backbone with "spare parts" from known protein structures. Protein Eng. 1989, 2, 335-345.
-
(1989)
Protein Eng.
, vol.2
, pp. 335-345
-
-
Claessens, M.1
Van Gutsem, E.2
Lasters, I.3
Wodak, S.4
-
39
-
-
0024348221
-
Protein conformational prediction
-
Fasman, G.D. Protein conformational prediction. Trends Biochem. Sci. 1989, 14, 259-299.
-
(1989)
Trends Biochem. Sci.
, vol.14
, pp. 259-299
-
-
Fasman, G.D.1
-
40
-
-
0017309766
-
Structural patterns in globular proteins
-
Levitt, M.,; Chothia, C. Structural patterns in globular proteins. Nature 1976, 261, 552-558.
-
(1976)
Nature
, vol.261
, pp. 552-558
-
-
Levitt, M.1
Chothia, C.2
-
41
-
-
0026348224
-
Use of homologous sequences to improve protein secondary structure prediction
-
Niermann, T.; Kirschner, K. Use of homologous sequences to improve protein secondary structure prediction. Methodol. Enzymol. 1991, 202, 45-59.
-
(1991)
Methodol. Enzymol.
, vol.202
, pp. 45-59
-
-
Niermann, T.1
Kirschner, K.2
-
42
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner, L.R. A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE 1989, 77, 257-285.
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-285
-
-
Rabiner, L.R.1
-
43
-
-
0034084864
-
On the convergence of a clustering algorithm for protein coding regions in microbial genomes
-
Baldi, P. On the convergence of a clustering algorithm for protein coding regions in microbial genomes. Bioinfomatics 2000, 16, 367-371.
-
(2000)
Bioinfomatics
, vol.16
, pp. 367-371
-
-
Baldi, P.1
|