JC virus genotypes in the western Pacific suggest Asian mainland relationships and virus association with early population movements

Human Biology

Volumn 74, Issue 3, 2002, Pages 473-488

  Yanagihara, Richard ^a   Nerurkar, Vivek R ^a   Scheirich, Iris ^a   Agostini, Hansjürgen T ^a   Mgone, Charles S ^a   Cui, Xiaohong ^a   Jobes, David V ^a   Cubitt, Christopher L ^a   Ryschkewitsch, Caroline F ^a   Hrdy, Daniel B ^a   Friedlaender, Jonathan S ^a   Stoner, Gerald L ^a  

^a UNIVERSITY OF HAWAII   (United States)

Author keywords

Austronesian; Genetics; Melanesian; Migration; Papua New Guinea; Phylogenetics; Polyomavirus; Population history

Indexed keywords

ANIMALIA; DNA VIRUSES; JC VIRUS; POLYOMAVIRUS;

VIRUS DNA;

ADULT; ARTICLE; FEMALE; GENETIC VARIABILITY; GENETICS; GENOTYPE; HUMAN; JC VIRUS; MALE; MIDDLE AGED; MIGRATION; MOLECULAR EVOLUTION; PACIFIC ISLANDS; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION GENETICS; VIRUS GENOME;

ADULT; DNA, VIRAL; EMIGRATION AND IMMIGRATION; EVOLUTION, MOLECULAR; FEMALE; GENETICS, POPULATION; GENOME, VIRAL; GENOTYPE; HUMANS; JC VIRUS; MALE; MIDDLE AGED; PACIFIC ISLANDS; PHYLOGENY; POLYMERASE CHAIN REACTION; VARIATION (GENETICS);

EID: 0036023270     PISSN: 00187143     EISSN: None     Source Type: Journal    
DOI: 10.1353/hub.2002.0037     Document Type: Article

References (35)

1. Genotypes of JC virus in East, Central and Southwest Europe
2. Molecular evolution and epidemiology of JC virus
3. Five complete genomes of JC virus Type 3 from Africans and African Americans
4. JC virus Type 2: Definition of subtypes based on DNA sequence analysis often complete genomes
5. Amplification of the complete polyomavirus JC genome from brain, cerebrospinal fluid and urine using pre-PCR restriction enzyme digestion
6. Asian genotypes of JC virus in Native Americans and in a Pacific Island population: Markers of viral evolution and human migration
7. Clinical progressive multifocal leukoencephalopathy: Diagnosis and treatment
8. Population structure and history in East Asia
9. Strains of JC virus in Amerind speakers of North America (Salish) and South America (Guaraní), Na-Dene speakers of New Mexico (Navajo), and modern Japanese suggest links through an ancestral Asian population
10. Reconstructing population history using JC virus: Amerinds, Spanish, and Africans in the ancestry of modern Puerto Ricans
11. Human polyomavirus JC virus genome
12. A 40,000-year-old human occupation site at Huon Peninsula, Papua New Guinea
13. Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia: Implications for the racial composition of modern China
14. Evolution of human polyomavirus JC
15. Inferring complex phylogenies
16. Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus
17. A novel JC virus variant found in the Highlands of Papua New Guinea has a 21-base pair deletion in the agnoprotein gene
18. New JC virus (JCV) genotypes from Papua New Guinea and Micronesia (Type 8 and Type 2E) and evolutionary analysis of 32 complete JCV genomes
19. Lack of disease-specific amino acid changes in the viral proteins of JC virus isolates from the brain with progressive multifocal leukoencephalopathy
20. Melanesian origin of Polynesian Y chromosomes
21. Human skeletal and dental remains from Lapita sites (1600-500 BC) in the Mussau Islands
22. Peopling of Japan as revealed by genotyping of urinary JC Virus DNA
23. Parent-to-child transmission is relatively common in the spread of the human polyomavirus JC virus
24. DNA rearrangements in organ-specific variants of polyomavirus JC strain GS
25. Mitochondrial and nuclear genetic relationships among Pacific Island and Asian populations
26. Mitochondrial DNA variation is an indicator of Austronesian influence in Island Melanesia
27. Mitochondrial DNA variation in the southwest Pacific
28. Genomic cloning and sequence analysis of Taiwan-3 human polyomavirus JC virus
29. Human polyomavirus JC variants in Papua New Guinea and Guam reflect ancient population settlement and viral evolution
30. Typing of urinary JC virus DNA offers a novel means of tracing human migrations
31. Do human and JC virus genes show evidence of host-parasite co-demography?
32. Molecular phylogeny and dissemination of human T-cell lymphotropic virus type 1 viewed within the context of primate evolution and human migration