Structure of antibody-bound peptides and retro-inverso analogues. A transferred nuclear overhauser effect spectroscopy and molecular dynamics approach

Biochemistry

Volumn 40, Issue 19, 2001, Pages 5720-5727

  Phan Chan Du, Angélique ^a   Petit, Marie Christine ^a   Guichard, Gilles ^b   Briand, Jean Paul ^b   Muller, Sylviane ^b   Cung, Manh Thong ^a  

^a LAB DE CHIM PHYS MACROMOLECULAIRE   (France)

^b INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE;

PEPTIDES;

NATURAL POLYMERS;

PEPTIDE DERIVATIVE;

AMINO ACID SEQUENCE; ARTICLE; CALCULATION; CARBOXY TERMINAL SEQUENCE; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR OVERHAUSER EFFECT; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTON NUCLEAR MAGNETIC RESONANCE;

ANTIBODIES, MONOCLONAL; ANTIBODY AFFINITY; BINDING SITES, ANTIBODY; CROSS REACTIONS; ENERGY TRANSFER; HISTONES; KINETICS; LIGANDS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OLIGOPEPTIDES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTONS; STEREOISOMERISM; SURFACE PLASMON RESONANCE;

EID: 0035873942     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi001151h     Document Type: Article

References (53)

1. Fauchère, J.-L., and Thurieau, C. (1992) Adv. Drug Res. 23, 128-154.
2. Giannis, A., and Kolter, T. (1993) Angew. Chem., Int. Ed. 32, 1244-1267.
3. Gante, J. (1994) Angew. Chem., Int. Ed. 33, 1699-1720.
4. Qabar, M., Urban, J., Sia, C., Klein, M., and Kahn, M. (1996) Il Farmaco 51, 87-96.
5. Shemyakin, M. M., Ovchinnikov, Y. U., and Ivanov, V. T. (1969) Angew. Chem., Int. Ed. 8, 492-499.
6. Hruby, V. J., Al-Obeidi, F., and Kazmierski, W. (1990) Biochem. J. 268, 249-262.
7. Marraud, M., Dupont, V., Grand, V., Zerkout, S., Lecoq, A., Boussard, G., Vidal, J., Collet, A., and Aubry, A. (1993) Biopolymers 33, 1135-1148.
8. Chorev, M., and Goodman, M. (1993) Acc. Chem. Res. 26, 266-273.
9. Leban, J. J., Kull, F. C., Jr., Landavazo, A., Stockstill, B., and McDermed, J. D. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 1922-1926.
10. Merrifield, R. B., Juvvadi, P., Andreu, D., Ubach, J., Boman, A., and Boman, H. G. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 3449-3453.
11. Fletcher, M. D., and Campbell, M. M. (1998) Chem. Rev. 98, 763-795.
12. Guichard, G., Benkirane, N., Zeder-Lutz, G., Van Regenmortel, M. H. V., Briand, J. P., and Muller, S. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 9765-9769.
13. Benkirane, N., Guichard, G., Van Regenmortel, M. H. V., Briand, J.-P., and Muller, S. (1995) J. Biol. Chem. 270, 11921-11926.
14. Muller, S., Guichard, G., Benkirane, N., Brown, F., Van Regenmortel, M. H. V., and Briand, J. P. (1995) Pept. Res. 8, 138-144.
15. Briand, J. P., Benkirane, N., Guichard, G., Newman, J. F. E., Van Regenmortel, M. H. V., Brown, F., and Muller, S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12545-12550.
16. Nargi, F., Kramer, E., Mezencio, J., Zamparo, J., Whetstone, C., Van Regenmortel, M. H. V., Briand, J. P., Muller, S., and Brown, F. (1999) Vaccine 17, 2888-2893.
17. Briand, J.-P., Guichard, G., Dumortier, H., and Muller, S. (1995) J. Biol. Chem. 270, 20686-20691.
18. McDonnell, J. M., Beavil, A. J., Mackay, G. A., Jameson, B. A., Korngold, R., Gould, H. J., and Sutton, B. J. (1996) Nat. Struct. Biol. 3, 419-426.
19. Ostankovitch, M., Guichard, G., Connan, F., Muller, S., Chaboissier, A., Hoebeke, J., Choppin, J., Briand, J.-P., and Guillet, J. G. (1998) J. Immunol. 161, 200-208.
20. Okamoto, S., Watanabe, M., Yamazahi, M., Yajima, T., Hayashi, T., Ishii, H., Mukai, M., Yamada, T., Watanabe, N., Jameson, B. A., and Hibi, T. (1999) Eur. J. Immunol. 29, 355-366.
21. Petit, M. C., Benkirane, N., Guichard, G., Phan-Chan-Du, A., Marraud, M., Cung, M. T., Briand, J.-P., and Muller, S. (1999) J. Biol. Chem. 274, 3686-3692.
22. Clore, G. M., and Gronenborn, A. M. (1982) J. Magn. Reson. 48, 402-417.
23. Yamazaki, T., Mierke, D. F., Said-Nejad, O. E., Felder, E. R., and Goodman, M. (1992) Int. J. Pept. Protein Res. 39, 161-181.
24. Carver, J. A., Esposito, G., Viglino, P., Fogolari, F., Guichard, G., Briand, J.-P., Van Regenmortel, M. H. V., Brown, F., and Mascagni, P. (1997) Biopolymers 41, 569-590.
25. Higgins, K. A., Bicknell, W., Keah, H. H., and Hearn, M. T. W. (1997) J. Pept. Res. 50, 421-435.
26. McDonnell, J. M., Fushman, D., Cahill, S. M., Sutton, B. J., and Cowburn, D. (1997) J. Am. Chem. Soc. 119, 5321-5328.
27. Otting, G. (1993) Curr. Opin. Struct. Biol. 3, 760-768.
28. Campbell, A. P., and Sykes, B. D. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 99-122.
29. Anglister, J., and Naider, F. (1991) Methods Enzymol. 203, 228-241.
30. Rosevear, P. R., and Mildvan, A. S. (1989) Methods Enzymol. 117, 333-375.
31. Neimark, J., and Briand, J. P. (1993) Pept. Res. 6, 219-228.
32. Chorev, M., Rubini, E., Gilon, C., Wormser, U., and Selinger, Z. (1983). J. Med. Chem. 26, 129-135.
33. Zeder-Lutz, G., Altschuh, D., Denery-Papini, S., Briand, J,-P., Tribbick, G., and Van Regenmortel, M. H. V. (1993) J. Mol. Recognit. 6, 71-79.
34. Benkirane, N., Friede, M., Guichard, G., Briand, J.-P., Van Regenmortel, M. H. V., and Muller, S. (1993) J. Biol. Chem. 268, 26279-26285.
35. Kumar, A., Wagner, G., Ernst, R. R., and Wuthrich, K. (1981) J. Am. Chem. Soc. 103, 3654-3658.
36. Cung, M. T., Demange, P., Marraud, M., Tsikaris, V., Sakarellos, C., Papadouli, I., Kokla, A., and Tzartos, S. J. (1991) Biopolymers 31, 769-776.
37. Piotto, M., Saudek, V., and Sklenar, V. (1992) J. Biomol. NMR 2, 661-666.
38. Bartels, C., Xia, T.-H., Billeter, M., Güntert, P., and Wüthrich, K. (1995) J. Biomol. NMR 5, 1-10.
39. Güntert, P., Mumenthaler, C., and Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298.
40. Dauber-Osguthorpe, P., Roberts, V. A., Osguthorpe, D. J., Wolff, J., Genest, M., and Hagler, A. T. (1988) Proteins: Struct., Fund., Genet. 4, 31-47.
41. Clore, G. M., and Gronenborn, A. M. (1987) Protein Eng. I, 275-288.
42. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.
43. Nilges, M, Clore. G. M., and Gronenborn, A. M. (1988) FEBS Lett. 229, 317-324.
44. Clore, G. M., Brunger, A. T., Karplus, M., and Gronenborn, A. M. (1986) J. Mol. Biol. 191, 523-551.
45. Scheek, R. M., van Gusteren, W. F., and Kaptein, R. (1989) Methods Enzymol. 177, 204-218.
46. Campbell, A. P., and Sykes, B. D. (1991) J. Magn. Reson. 93, 77-92.
47. Campbell, A. P., and Sykes, B. D. (1991) J. Biomol. NMR 1, 391-402.
48. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, pp 162-166, Wiley, New York.
49. Sternberg, M., and Nygren, H. (1988) J. Immunol. Methods 113, 3-15.
50. Azimzadeh, A., Pellequer, J. L., and Van Regenmortel, M. H. V. (1992) J. Mol. Recognit. 5, 9-18.
51. Wilson, I. A., and Stanfield, R. L. (1994) Curr. Opin. Struct. Biol. 4, 857-867.
52. Kuntz, I. D. (1972) J. Am. Chem. Soc. 94, 4009-4012.
53. Rose, G. D., Gierasch, L. M., and Smith, J. A. (1985) Adv. Protein Chem. 37, 1-109.