Hormone activation induces nucleosome positioning in vivo

EMBO Journal

Volumn 19, Issue 5, 2000, Pages 1023-1033

  Belikov, Sergey ^a,b   Gelius, Birgitta ^a   Almouzni, Geneviève ^c   Wrange, Örjan ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^c CNRS   (France)

Author keywords

Chromatin structure; Glucocorticoid receptor; MMTV promoter; Nucleosome positioning; Xenopus oocyte

Indexed keywords

GLUCOCORTICOID; GLUCOCORTICOID RECEPTOR;

ARTICLE; CHROMATIN; HORMONE ACTION; HORMONE BINDING; IN VIVO STUDY; NONHUMAN; NUCLEOSOME; ONCOVIRINAE; OOCYTE; PRIORITY JOURNAL; PROMOTER REGION; RNA TRANSLATION; TRANSCRIPTION REGULATION; XENOPUS LAEVIS;

MAMMARY TUMOR VIRUS; MOUSE MAMMARY TUMOR VIRUS; ONCOVIRINAE; TUMOR VIRUS; XENOPUS LAEVIS;

EID: 0034161435     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/19.5.1023     Document Type: Article

References (54)

1. Almouzni, G. and Wolffe, A.P. (1993) Replication-coupled chromatin assembly is required for repression of basal transcription in vivo. Genes Dev., 7, 2033-2047.
2. Archer, T.K., Cordingley, M.G., Wolford, R.G. and Hager, G.L. (1991) Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter. Mol. Cell. Biol., 11, 688-698.
3. Archer, T.K., Lefebvre, P., Wolford, R.G. and Hager, G.L. (1992) Transcription factor loading on the MMTV promoter: a bimodal mechanism for promoter activation. Science, 255, 1573-1576.
4. Bresnick, E.H., Bustin, M., Marsaud, V., Richard-Foy, H. and Hager, G.L. (1992) The transcriptionally-active MMTV promoter is depleted of histone H1. Nucleic Acids Res., 20, 273-278.
5. Buetti, E. and Kuhnel, B. (1986) Distinct sequence elements involved in the glucocorticoid regulation of the mouse mammary tumor virus promoter identified by linker scanning mutagenesis. J. Mol. Biol., 190, 379-38-9.
6. Church, G.M. and Gilbert, W. (1984) Genomic sequencing. Proc. Natl Acad. Sci. USA, 81, 1991-1995.
7. Colman, A. (1984) Expression of exogenous DNA in Xenopus oocytes. In Hames, B.D. and Higgins, S.J. (eds), Transcription and Translation-A Practical Approach. IRL Press, Oxford, UK, pp. 49-69.
8. Cordingley, M.G., Riegel, A.T. and Hager, G.L. (1987) Steroid-dependent interaction of transcription factors with the inducible promoter of mouse mammary tumor virus in vivo. Cell, 48, 261-270.
9. Di Croce, L., Koop, R., Vendetti, R., Westphal, H.M., Nightingale, K.P., Corona, D.F.V., Pecker, P.B. and Beato, M. (1999) Two-step synergism between the progesterone receptor and the DNA-binding domain of nuclear factor 1 on MMTV minichromosomes. Mol. Cell. 4, 45-54.
10. Flaus, A. and Richmond, T.J. (1998) Positioning and stability of nucleosomes on MMTV 3′LTR sequences. J. Mol. Biol., 275, 427-441.
11. Fragoso, G., John, S., Roberts, M.S. and Hager, G.L. (1995) Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames. Genes Dev., 9, 1933-1947.
12. Fragoso, G., Pennie, W., John, S. and Hager, G.L. (1998) The position and length of the steroid dependent hypersensitive region in the MMTV LTR is invariant despite multiple nucleosome B frames. Mol. Cell. Biol., 18, 3633-3644.
13. Fryer, C.J. and Archer, T.K. (1998) Chromatin remodeling by the glucocorticoid receptor requires the BRG1 complex. Nature, 393, 88-91.
14. Gelius, B., Wade, P., Wolffe, A.P., Wrange, Ö. and Östlund Farrants, A.-K. (1999) Characterization of a chromatin remodeling activity in Xenopus oocytes. Eur. J. Biochem., 262, 426-434.
15. Gouilleux, F., Sola, B., Cuette, B. and Richard-Foy, H. (1991) Cooperation between structural elements in hormone-regulated transcription from the mouse mammary tumor virus promoter. Nucleic Acids Res., 19, 1563-1569.
16. Hamiche, A., Sandaltzopoulos, R., Gdula, A.A. and Wu.C. (1999) ATP-dependent histone octamer sliding mediated by the chromatin remodelling complex NURF. Cell, 97, 833-842.
17. Man, M., Kim, U.-J., Kayne, P. and Grunstein, M. (1988) Depletion of histone H4 and nucleosomes activates the PHO5 gene in Saccharomyces cerevisiae. EMBO J., 7, 2221-2228.
18. Hayes, J.J., Clark, D.J. and Wolffe, A.P. (1991) Histone contributions to the structure of DNA in the nucleosome. Proc. Natl Acad. Sci. USA, 88, 6829-6833.
19. Kingston, R.E. and Narlikar, G.J. (1999) ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes Dev., 13, 2339-2352.
20. Kusk, P., John, S., Fragoso, G., Michelotti, J. and Hager, G.L. (1996) Characterization of an NF-1/CTF family member as a functional activator of the mouse mammary tumor virus long terminal repeat 5′ enhancer. J. Biol. Chem., 271, 31269-31276.
21. Längst, G., Bonte, E.J., Corona, D.F.V. and Becker, P. (1999) Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer. Cell, 97, 843-852.
22. Lefebvre, P., Berard, D.S., Cordingley, M.G. and Hager, G.L. (1991) Two regions of the mouse mammary long terminal repeat regulate the activity of its promoter in mammary cell lines. Mol. Cell. Biol., 11, 2529-2537.
23. Liu, Z., Wong, J., Tsai, M.J. and O'Malley, B.W. (1999) Steroid receptor coactivator-1 (SRC-1) enhances ligand-dependent and receptor-dependent cell-free transcription in chromatin. Proc. Natl Acad. Sci. USA, 96, 9485-9490.
24. Lu, Q., Wallrath, L.L. and Elgin, S.C. (1995) The role of a positioned nucleosome in the Drosophila melanogaster hsp26 promoter. EMBO J., 14, 4738-4746.
25. Luger, K., Mäder, A.W., Richmond, R.K., Sargent, D.F. and Richmond, T.J. (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature, 389, 251-260.
26. Miesfeld, R., Rusconi, S., Godowski, P.J., Maler, B.A., Okret, S., Wikström, A.-C., Gustafsson, J.-Å. and Yamamoto, K.R. (1986) Genetic complementation of a glucocorticoid receptor deficiency by expression of cloned receptor cDNA. Cell, 46, 389-399.
27. Muchardt, C. and Yaniv, M. (1993) A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila and genes potentiates transcriptional activation by the glucocorticoid receptor. EMBO J., 12, 4279-4290.
28. Ohlsson, H. and Edlund, T. (1986) Sequence-specific interactions of nuclear factors with insulin gene enhancer. Cell, 45, 35-44.
29. Östlund Farrants, A.-K., Blomquist, P., Kwon, H. and Wrange, Ö. (1997) Glucocorticoid receptor-glucocorticoid response element binding stimulates nucleosome disruption by the SWI/SNF complex. Mol. Cell. Biol., 17, 895-905.
30. Payvar, F., DeFranco, D., Firestone, G.L., Edgar, B., Wrange, Ö., Okret, S., Gustafsson, J.-Å. and Yamamoto, K.R. (1983) Sequence-specific binding of glucocorticoid receptor to MTV DNA at sites within and upstream of the transcribed region. Cell, 35, 381-392.
31. Perlmann, T. and Wrange, O. (1988) Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome. EMBO J., 7, 3073-3079.
32. Perlmann, T. and Wrange, Ö. (1991) Inhibition of chromatin assembly in Xenopus oocytes correlates with derepression of the mouse mammary tumor virus promoter. Mol. Cell. Biol., 11, 5259-5265.
33. Pina, B., Bruggemeier, U. and Beato, M. (1990) Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter. Cell, 60, 719-731.
34. Rachez, C., Lemon, B.D., Suldan, Z., Bromleight, V., Gamble, M., Näär, A.M., Erdjument-Bromage, H., Tempst, P. and Freedman, L.P. (1999) Ligand-dependent transcription activation by nuclear receptors requires the DRIP complex. Nature, 398, 824-828.
35. Richard-Foy, H. and Hager, G.L. (1987) Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter. EMBO J., 6, 2321-2328.
36. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, NY.
37. Schild, C, Claret, F.-X., Wahli, W. and Wolffe, A.P. (1993) A nucleosome dependent static loop potentiates estrogen-regulated transcription from Xenopus vitellogenin B1 promoter in vitro. EMBO J., 12, 423-433.
38. Sewack, G.F. and Hansen, U. (1997) Nucleosome positioning and transcription-associated chromatin alterations on the human estrogen-responsive pS2 promoter. J. Biol. Chem., 272, 31118-31129.
39. Shim, E.Y., Woodcock, C. and Zaret, K.S. (1998) Nucleosome positioning by the winged helix transcription factor HNF3. Genes Dev., 12, 5-10.
40. Simpson, R.T. (1991) Nucleosome positioning: occurrence, mechanisms and functional consequences. Prog. Nucleic Acid Res. Mol. Biol., 40, 143-184.
41. Spangenberg, C., Eisfeld, K., Stünkel, W., Luger, K., Richmond, T.J., Truss, M. and Beato, M. (1998) The mouse mammary tumor virus promoter positioned on a tetramer of histones H3 and H4 binds nuclear factor 1 and OTF1. J. Mol. Biol., 278, 725-739.
42. Theulaz, I., Hipskind, R., Heggeler-Bordier, B., Green, S., Kumar.V., Chambon, P. and Wahli, W. (1988) Expression of human estrogen receptor mutants in Xenopus oocytes: correlation between transcriptional activity and ability to form protein-DNA complexes. EMBO J., 1, 1653-1660.
43. Truss, M., Bartsch, J., Schulbert, A., Hache, R.J.G. and Beato, M. (1995) Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo. EMBO J., 14, 1737-1751.
44. Venditti, P., Di Croce, L. Kauer, M., Blank, T., Becker, P. and Beato, M. (1998) Assembly of MMTV minichromosomes with positioned nucleosomes precludes NF1 access but not restriction enzyme cleavage. Nucleic Acids Res., 26, 3657-3666.
45. Whitehouse, I., Flaus, A., Cairns, B.R., White, M.F., Workman, J.L. and Owen-Hughes, T. (1999) Nucleosome mobilization catalysed by the yeast SWI/SNF complex. Nature, 400, 784-787.
46. Wieland, S.Y., Schaffner, W. and Rusconi, S. (1988) Metal binding finger structures in the glucocorticoid receptor defined by site-directed mutagenesis. EMBO J., 7, 2503-2508.
47. Wong, J., Shi, Y.-B. and Wolffe, A.P. (1995) A role for nucleosome assembly in both silencing and activation of the Xenopus TRβ A gene by the thyroid hormone receptor. Genes Dev., 9, 2696-2711.
48. Wong, J., Patterton, D., Imhof, A., Gushin, D., Shi, Y.-B. and Wolffe, A.P. (1998) Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase. EMBO J., 17, 520-534.
49. Wu, C. (1989) Analysis of hypersensitive sites in chromatin. Methods Enzymol., 170, 269-289.
50. Wyrick, J.J., Holstege, F.C. Jennings, E.G., Causton, H.C. Shore, D., Grunstein, M., Lander, E.S. and Young, R.A. (1999) Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature, 402, 418-421.
51. Xu, L., Glass, C.K. and Rosenfeld, M.G. (1999) Coactivators and corepressors in nuclear receptor function. Curr. Opin. Genet. Dev., 9, 140-147.
52. Yoshinaga, S.K., Peterson, C.I., Herskowitz, I. and Yamamoto, K.R. (1992) Roles of SWI1, SWI2 and SWI3 proteins for transcriptional enhancement by steroid receptors. Science, 258, 1598-1604.
53. Zaret, K.S. and Yamamoto, K.R. (1984) Reversible and persistent changes in chromatin structure accompany activation of a glucocorticoid-dependent enhancer element. Cell, 38, 29-38.
54. Zernika-Goetz, M., Pines, J., Ryan, K., Siemering, K.R., Haseloff, J., Evans, M.J. and Gurdon, J.B. (1996) An indelible lineage marker for Xenopus using a mutated green fluorescence protein. Development, 122, 3719-3724.