Structural organization of the human genome: Distribution of nucleotides, Alu repeats, and exons in chromosomes 21 and 22

Molecular Biology

Volumn 35, Issue 6, 2001, Pages 883-889

  Blinov, V M ^a   Denisov, S I ^a   Saraev, D V ^a   Shvetsov, D V ^a   Uvarov, D L ^a   Oparina, N Yu ^b   Sandakhchiev, L S ^a   Kisselev, L L ^b  

^a STATE RESEARCH CENTER OF VIROLOGY AND BIOTECHNOLOGY VECTOR   (Russian Federation)

^b ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

Author keywords

Alu repeats; Chromosome 21; Chromosome 22; Human genome; MegaGene program; Nucleotide composition

Indexed keywords

EID: 0035497848     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1013294503831     Document Type: Article

References (34)

1. 1. Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al., Science, 2001, vol. 291, pp. 1304-1351.
2. 2. International Human Genome Sequencing Consortium., Nature, 2001, vol. 409, pp. 860-921.
3. 3. Schmid, C. and Maraia, R., Curr. Opin. Genet. Dev., 1992, vol. 2, pp. 874-882.
4. 4. Rogers, J., Nature, 1998, vol. 301, p. 460.
5. 5. Schmid, C. and Jelinek, W.R., Science, 1982, vol. 216, pp. 1065-1070.
6. 6. Hamdi, H., Nishio, H., Zelinski, R., and Dugaczyk, A., J. Mol. Biol., 1999, vol. 289, pp. 861-871.
7. 7. Batzer, M.A., Deininger, P.L., Hellmann-Blumberg, U., Jurka, J., Labuda, D., Rubin, C.M., Schmid, C.W., Zietkievicz, E., and Zuckerkandl, E., J. Mol. Evol., 1996, vol. 42, pp. 3-6.
8. 8. Almenoff, J.S., Jurka, J., and Schoolnik, G.K., J. Biol. Chem., 1994, vol. 269, pp. 16610-16617.
9. 9. Makalowski, W., Mitchell, G.A., and Labuda, D., Trends Genet., 1994, vol. 10, pp. 188-193.
10. 10. Norris, J., Fan, D., Aleman, C., Marks, J.R., Futreal, P.A., Wiseman, R.W., Iglehart, J.D., Deininger, P.L., and McDonnell, D.P., J. Biol. Chem., 1995, vol. 270, pp. 22777-22782.
11. 11. Vansant, G. and Reynolds, W.F., Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 8229-8233.
12. 12. Piedrafita, F.J., Molander, R.B., Vansant, G., Orlova, E.A., Pfahl, M., and Reynolds, W.F., J. Biol. Chem., 1996, vol. 271, pp. 14412-14420.
13. 13. Chu, W.M., Ballard, R., Carpick, B.W., Williams, B.R., and Schmid, C.W., Mol. Cell Biol., 1998, vol. 18, pp. 58-68.
14. 14. Babich, A., Aksenov, N., Alexeenko, V., Oei, S.L., Buchlow, G., and Tomilin, N., Gene, 1999, vol. 239, pp. 341-349.
15. 15. Britten, R.J., Gene, 1997, vol. 205, pp. 177-182.
16. 16. Tomilin, N.V., Int. Rev. Cytol., 1999, vol. 186, pp. 1-48.
17. 17. Flint, J., Rochette, J., Craddock, C.F., Dode, C., Vignes, B., Horsley, S.W., Kearney, L., Buckle, V.J., Ayyub, H., and Higgs, D.R., Hum. Mol. Genet., 1996, vol. 5, pp. 1163-1169.
18. 18. Garfinkel, D.J., Trends Microbiol., 1997, vol. 5, pp. 173-175.
19. 19. Toda, Y. and Tomita, M., Gene, 1997, vol. 205, pp. 173-176.
20. 20. Kazazian, H.H., Jr., Curr. Opin. Genet. Dev., 1998, vol. 8, pp. 343-350.
21. 21. Shen, M., Batzer, M., and Deininger, P., J. Mol. Evol., 1991, vol. 33, pp. 311-320.
22. 22. Deininger, P.L. and Batzer, M.A., Mol. Genet. Metabolism, 1999, vol. 67, pp. 183-193.
23. 23. Hamdi, H., Nishio, H., Tavis, J., Zelinski, R., and Dugaiczyk, A., J. Mol. Biol., 2000, vol. 299, pp. 931-939.
24. 24. Hattori, M., Fujiyama, A., Taylor, T.D., et al., Nature, 2000, vol. 405, pp. 311-319.
25. 25. Dunham, I., Shimizu, N., Roe, B.A., et al., Nature, 1999, vol. 402, pp. 489-495.
26. 26. Resenchuk, S.M. and Blinov, V.M., Comput. Appl. Biosci., 1995, vol. 11, pp. 7-11.
27. 27. Bernardi, G., Annu. Rev. Genetics, 1995, vol. 29, pp. 445-476.
28. 28. Jabbari, K. and Bernardi, G., Gene, 1998, vol. 224, pp. 123-128.
29. 29. Yang, F., Graphodatsky, A.S., O'Brien, P.C., Colabella, A., Solank, N., Squire, M., Sargan, D.R., and Ferguson-Smith, M.A., Chromosome Res., 2000, vol. 8, pp. 393-404.
30. 30. Jurka, J., Proc. Natl. Acad. Sci. USA, 1997, vol. 94, pp. 1872-1877.
31. 31. Toda, Y., Saito, R., and Tomita, M., J. Mol. Biol., 2000, vol. 50, pp. 232-237.
32. 32. Jurka, J., Molecular Biology Intelligence Unit: the Impact of Short Interspersed Elements (SINEs) on the Host Genome, Maraia, R.J., Ed., Austin: R.G. Landes Company, 1995, pp. 25-41.
33. 33. Blinov, V.M., Resenchuk, S.M., Uvarov, D.L., Chirikova, G.B., Denisov, S.I., and Kisselev, L.L., Mol. Biol., 1998, vol. 32, pp. 70-77.
34. 34. Stenger, I.E., Lobachev, K.S., Gordenin, D., Darden, T.A., Jurka, J., and Resnick, M.A., Genome Res., 2001, vol. 11, pp. 12-27.