Alu elements as an aid in deciphering genome rearrangements

Gene

Volumn 205, Issue 1-2, 1997, Pages 173-176

  Toda, Yoshimi ^a   Tomita, Masaru ^a  

^a KEIO UNIVERSITY   (Japan)

Author keywords

Computer; Direct repeat; Evolutionary distance; Poly(A) tail; Sequence evolution

Indexed keywords

HUMAN GROWTH HORMONE; POLYADENYLIC ACID; REPETITIVE DNA;

ALU SEQUENCE; COMPUTER ANALYSIS; CONFERENCE PAPER; EVOLUTION; GENE DUPLICATION; GENE REARRANGEMENT; GENOME; HUMAN; PRIORITY JOURNAL;

CHROMOSOME MAPPING; EVOLUTION, MOLECULAR; GENE REARRANGEMENT; GENOME; GROWTH HORMONE; HUMANS; REPETITIVE SEQUENCES, NUCLEIC ACID;

PRIMATES;

EID: 0031593158     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(97)00541-6     Document Type: Conference Paper

References (20)

1. Barker, W.C., Ketcham, L.K., Dayhoff, M.O., 1978. A comprehensive examination of protein sequences for evidence of internal gene duplication. J. Mol. Evol. 10, 265-281.
2. Barsh, G.S., Seeburg, P.H., Gelinas, R.E., 1983. The human growth hormone gene family: structure and evolution of the chromosomal locus. Nucleic Acids Res. 11, 3939-3958.
3. Batzer, M.A., Deininger, P.L., Hellmann-Blumberg, U., Jurka, J., Labuda, D., Rubin, C.M., Schmid, C.W., Zietkiewicz, E., Zuckerkandl, E., 1996. Standardized nomenclature for Alu repeats. J. Mol. Evol. 42, 3-6.
4. Chen, E.Y., Liao, Yu-Cheng, Smith, D.H., Barrera-Saldana, H.A., Gelinas, R.E., Seeburg, P.H., 1989. The human growth hormone locus: Nucleotide sequence, biology, and evolution. Genomics 4, 479-497.
5. Daniels, G.R., Deininger, P.L., 1985. Integration site preferences of the Alu family and similar repetitive DNA sequences. Nucleic Acids Res. 13, 8939-8954.
6. Gotoh, O., 1993. Extraction of conserved or variable regions from a multiple sequence alignment. Proceedings of Genome Informatics Workshop IV, pp. 109-113.
7. Gotoh, O., 1994. Further improvement in group-to-group sequence alignment with generalized profile operations. CABIOS 10, 379-387.
8. Gotoh, O., 1995. A weighting system and algorithm for aligning many phylogenetically related sequences. CABIOS 10, 543-551.
9. Hughes, A., 1996. Gene duplication and recombination in the evolution of mammalian Fc receptors. J. Mol. Evol. 43, 4-10.
10. Jurka, J., Klonowski, P., Dagman, V., Pelton, P., 1996. CENSOR - a program for identification and elimination of repetitive elements from DNA sequences. Comput. Chem. 20, 119-122.
11. Kapitonov, V., Jurka, J., 1996. The age of Alu subfamilies. J. Mol. Evol. 42, 59-65.
12. Katsanis, N., Fitzgibbon, J., Fisher, E.M.C., 1996. Paralogy mapping: identification of a region in the human MHC triplicated on human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci. Genomics 35, 101-108.
13. McLachlan, A.D., 1976. Evidence for gene duplication in collagen. J. Mol. Biol. 107, 159-174.
14. Mňuková-Fajdelová, M., Satta, Y., O'hUigin, C., Mayer, W.E., Figueroa, F., Klein, J., 1994. Alu elements of the primate major histocompatibility complex. Mammal. Genome 5, 405-415.
15. Okada, N., 1991. SINEs: short interspersed repeated elements of the eukaryotic genome. TREE 6, 358-361.
16. Okada, N., 1994. Retroposons as time markers of evolution. (Toki no jihyou to shite no retroposon). Proteins, Nucleic Acids, and Enzymes (Tanpakushitu, kakusan, kouso) 39, 2724-2735.
17. Orgel, L.F., 1977. Gene-duplication and the origin of proteins with novel functions. J. Theor. Biol. 67, 773
18. Rinehart, F.P., Ritch, T.G., Deininger, P.L., Schmid, C.W., 1980. Renaturation rate studies of a single family of interspersed repeated DNA sequences in human deoxyribonuclcic acid. Biochemistry 20, 3003-3010.
19. Schoenbach, C., Vincek, V., Mayer, W.E., Golubic, M., O'hUigin, C., Klein, J., 1993. Multiplication of Mhc-DRB5 loci in the orangutan: implications for the evolution of DRB haplotypes. Mammal. Genome 4, 159-170.
20. Weiner, A.M., Deininger, P.L., Efstratiadis, A., 1986. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55, 631-661.