SCOPUS 정보 검색 플랫폼

Volumn 29, Issue 19, 2001, Pages 3988-3996

PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches

(3) Fujibuchi, W a Anderson, J S J a Landsman, D a

a NATIONAL INSTITUTES OF HEALTH (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DNA;

ARTICLE; COMPUTER PROGRAM; CONSENSUS SEQUENCE; CONTROLLED STUDY; CORRELATION FUNCTION; DNA MICROARRAY; GENE CLUSTER; GENE EXPRESSION; NONHUMAN; PHENOTYPE; PREDICTION; PRIORITY JOURNAL; PROBABILITY; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION REGULATION;

EID: 0035477621 PISSN: 03051048 EISSN: None Source Type: Journal
DOI: 10.1093/nar/29.19.3988 Document Type: Article

Times cited : (15)

References (23)

1
- 0027912333
- Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
- (1993) Science , vol.262 , pp. 208-214
- Lawrence, C.E.¹ Altschul, S.F.² Boguski, M.S.³ Liu, J.S.⁴ Neuwald, A.F.⁵ Wootton, J.C.⁶

2
- 0034628901
- Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
- (2000) J. Mol. Biol. , vol.296 , pp. 1205-1214
- Hughes, J.D.¹ Estep, P.W.² Tavazoie, S.³ Church, G.M.⁴

3
- 0032483307
- Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
- (1998) J. Mol. Biol. , vol.281 , pp. 827-842
- Van Helden, J.¹ André, B.² Collado-Vides, J.³

4
- 0032413411
- Predicting gene regulatory elements in silico on a genomic scale
- (1998) Genome Res. , vol.8 , pp. 1202-1215
- Brazma, A.¹ Jonassen, I.² Vilo, J.³ Ukkonen, E.⁴

5
- 0028971143
- MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
- (1995) Nucleic Acids Res. , vol.23 , pp. 4878-4884
- Quandt, K.¹ Frech, K.² Karas, H.³ Wingender, E.⁴ Werner, T.⁵

6
- 0033049748
- TargetFinder: Searching annotated sequence databases for target genes of transcription factors
- (1999) Bioinformatics , vol.15 , pp. 172-173
- Lavorgna, G.¹ Guffanti, A.² Borsani, G.³ Bllabio, A.⁴ Boncinelli, E.⁵

7
- 0033563516
- Promoter analysis of co-regulated genes in the yeast genome
- (1999) Comput. Chem. , vol.23 , pp. 233-250
- Zhang, M.Q.¹

8
- 0032848435
- Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae
- (1999) Genome Res. , vol.9 , pp. 775-792
- Wolfsberg, T.G.¹ Gabrielian, A.E.² Campbell, M.J.³ Cho, R.J.⁴ Spouge, J.L.⁵ Landsman, D.⁶

9
- 0022422660
- Nomenclature for incompletely specified bases in nucleic acid sequences: Recommendations 1984
- (1985) Nucleic Acids Res. , vol.13 , pp. 3021-3030
- Cornish-Bowden, A.¹

10
- 0032861774
- SCPD: A promoter database of the yeast Saccharomyces cerevisiae
- (1999) Bioinformatics , vol.15 , pp. 607-611
- Zhu, J.¹ Zhang, M.Q.²

11
- 0033976586
- TRANSFAC: An integrated system for gene expression regulation
- (2000) Nucleic Acids Res. , vol.28 , pp. 316-319
- Wingender, E.¹ Chen, X.² Hehl, R.³ Karas, H.⁴ Liebich, I.⁵ Matys, V.⁶ Meinhardt, T.⁷ Pruss, M.⁸ Reuter, I.⁹ Schacherer, F.¹⁰

12
- 0030669030
- Exploring the metabolic and genetic control of gene expression on a genomic scale
- (1997) Science , vol.278 , pp. 680-686
- DeRisi, J.L.¹ Iyer, V.R.² Brown, P.O.³

13
- 0032441150
- Cluster analysis and display of genome-wide expression patterns
- (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 14863-14868
- Eisen, M.B.¹ Spellman, P.T.² Brown, P.O.³ Botstein, D.⁴

14
- 0030699475
- Yeast microarrays for genome wide parallel genetic and gene expression analysis
- (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 13057-13062
- Lashkari, D.A.¹ DeRisi, J.L.² McCusker, J.H.³ Namath, A.F.⁴ Gentile, C.⁵ Hwang, S.Y.⁶ Brown, P.O.⁷ Davis, R.W.⁸

15
- 0032561246
- The transcriptional program of sporulation in budding yeast
- (1998) Science , vol.282 , pp. 699-705
- Chu, S.¹ DeRisi, J.² Eisen, M.³ Mulholland, J.⁴ Botstein, D.⁵ Brown, P.O.⁶ Herskowitz, I.⁷

16
- 0032567081
- Dissecting the regulatory circuitry of a eukaryotic genome
- (1998) Cell , vol.95 , pp. 717-728
- Holstege, F.C.¹ Jennings, E.G.² Wyrick, J.J.³ Lee, T.I.⁴ Hengartner, C.J.⁵ Green, M.R.⁶ Golub, T.R.⁷ Lander, E.S.⁸ Young, R.A.⁹

17
- 0031742022
- Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
- (1998) Mol. Biol. Cell , vol.9 , pp. 3273-3297
- Spellman, P.T.¹ Sherlock, G.² Zhang, M.Q.³ Iyer, V.R.⁴ Anders, K.⁵ Eisen, M.B.⁶ Brown, P.O.⁷ Botstein, D.⁸ Futcher, B.⁹

18
- 0032112293
- A genome-wide transcriptional analysis of the mitotic cell cycle
- (1998) Mol. Cell , vol.2 , pp. 65-73
- Cho, R.J.¹ Campbell, M.J.² Winzeler, E.A.³ Steinmetz, L.⁴ Conway, A.⁵ Wodicka, L.⁶ Wolfsberg, T.G.⁷ Gabrielian, A.E.⁸ Landsman, D.⁹ Lockhart, D.J.¹⁰ Davis, R.W.¹¹

19
- 0033573938
- Global response of Saccharomyces cerevisiae to an alkylating agent
- (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 1486-1491
- Jelinsky, S.A.¹ Samson, L.D.²

20
- 0033957561
- Integrating functional genomic information into the Saccharomyces genome database
- (2000) Nucleic Acids Res. , vol.28 , pp. 77-80
- Ball, C.A.¹ Dolinski, K.² Dwight, S.S.³ Harris, M.A.⁴ Issel-Tarver, L.⁵ Kasarskis, A.⁶ Scafe, C.R.⁷ Sherlock, G.⁸ Binkley, G.⁹ Jin, H.¹⁰ Kaloper, M.¹¹ Orr, S.D.¹² Schroeder, M.¹³ Weng, S.¹⁴ Zhu, Y.¹⁵ Botstein, D.¹⁶ Cherry, J.M.¹⁷

21
- 0035162272
- Database resources of the National Center for Biotechnology Information
- (2001) Nucleic Acids Res. , vol.29 , pp. 11-16
- Wheeler, D.L.¹ Church, D.M.² Lash, A.E.³ Leipe, D.D.⁴ Madden, T.L.⁵ Pontius, J.U.⁶ Schuler, G.D.⁷ Schriml, L.M.⁸ Tatusova, T.A.⁹ Wagner, L.¹⁰ Rapp, B.A.¹¹

22
- 0028799428
- Mcm1 is required to coordinate G2-specific transcription in Saccharomyces cerevisiae
- (1995) Mol. Cell. Biol. , vol.15 , pp. 5917-5928
- Althoefer, H.¹ Schleiffer, A.² Wassmann, K.³ Nordheim, A.⁴ Ammerer, G.⁵

23
- 0033968614
- The yeast proteome database (YPD) and Caenorhabditis elegans proteome database (WormPD): Comprehensive resources for the organization and comparison of model organism protein information
- (2000) Nucleic Acids Res. , vol.28 , pp. 73-76
- Costanzo, M.C.¹ Hogan, J.D.² Cusick, M.E.³ Davis, B.P.⁴ Fancher, A.M.⁵ Hodges, P.E.⁶ Kondu, P.⁷ Lengieza, C.⁸ Lew-Smith, J.E.⁹ Lingner, C.¹⁰ Roberg-Perez, K.J.¹¹ Tillberg, M.¹² Brooks, J.E.¹³ Garrels, J.I.¹⁴

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.