RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour

Nucleic Acids Research

Volumn 28, Issue 2, 2000, Pages 489-497

  Parrott, Andrew M ^a   Lago, Hugo ^a   Adams, Chris J ^a   Ashcroft, Alison E ^a   Stonehouse, Nicola J ^a   Stockley, Peter G ^a  

^a UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; COAT PROTEIN; RNA;

ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; FLUORESCENCE; MS2 VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERATOR GENE; PRIORITY JOURNAL; PROTEIN RNA BINDING;

EID: 0034650498     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/28.2.489     Document Type: Article

References (31)

1. Witherall,G.W., Gott,J.M. and Uhlenbeck,O.C. (1991) Prog. Nucleic Acid Res. Mol. Biol., 40, 185-220.
2. Stockley,P.G., Stonehouse,N.J., Murray,J.B., Goodman,S.T.S., Talbot,S.J., Adams,CJ., Liljas,L. and Valegård,K. (1995) Nucleic Acids Res., 23, 2512-2518.
3. Talbot,S.J., Goodman,S., Bates,S.R.E., Fishwick,C.W.G. and Stockley,P.G. (1990) Nucleic Acids Res., 18, 3521-3528.
4. Borer,P.N., Lin,Y., Wang,S., Roggenbuck,M.W., Gott,J.M., Uhlenbeck,O.C. and Pelczer,I. (1995) Biochemistry, 34, 6488-6503.
5. Nooren,I.M.A., Wang,K.Y., Borer,P.N. and Pelczer,I. (1998) J. Biomol. NMR, 11, 319-328.
6. Ni,C.-Z., Syed,R., Kodandapani,R., Wickersham,J., Peabody,D.S. and Ely,K.R. (1995) Structure, 3, 255-263.
7. Valegård,K., Murray,J.B., Stockley,P.G., Stonehouse,N.J. and Liljas,L. (1994) Nature, 371, 623-626.
8. Valegård,K., Murray,J.B., Stonehouse,N.J., Van den Worm,S.H.E., Stockley,P.G. and Liljas,L. (1997) J. Mol. Biol., 270, 724-738.
9. Van den Worm,S.H.E., Stonehouse,N.J., Valegård,K., Murray,J.B., Walton,C., Fridborg,K., Stockley,P.G. and Liljas,L. (1998) Nucleic Acids Res., 26, 1345-1351.
10. Grahn,E., Stonehouse,N.J., Murray,J.B., Van den Worm,S., Valegård,K., Fridborg,K., Stockley,P.G. and Liljas,L. (1999) RNA, 5, 131-138.
11. Schneider,D., Tuerk,C. and Gold,L. (1992) J. Mol. Biol., 228, 862-869.
12. Tuerk,C. and Gold,L. (1990) Science, 249, 505-510.
13. Gold,L., Brown,D., He,Y.Y., Shtatland,T., Singer,B.S. and Wu,Y. (1997) Proc. Natl Acad. Sci. USA, 94, 59-64.
14. Hirao,I., Spingola,M., Peabody,D. and Ellington,A.D. (1998) Mol. Divers., 4, 75-89.
15. Convery,M., Rowsell,S., Stonehouse,N.J., Ellington,A.D., Hirao,I., Murray,J.B., Peabody,D.S., Phillips,S.E.V. and Stockley,P.G. (1998) Nature Struct. Biol., 5, 133-139.
16. Rowsell,S., Stonehouse,N.J., Convery,M.A., Adams,C.J., Ellington,A.D., Hirao,I., Peabody,D.S., Stockley,P.G. and Phillips,S.E.V. (1998) Nature Struct. Biol., 5, 970-975.
17. Talbot,S.J., Medina,G., Fishwick,C.W.G., Haneef,I. and Stockley,P.G. (1991) FEBS Lett., 283, 159-164.
18. Ward,D.C., Reich,E. and Stryer,L. (1969) J. Biol. Chem., 244, 1228-1237.
19. Hochstrasser,R.A., Carver,T.E., Sowers,L.C. and Millar,D.P. (1994) Biochemistry, 33, 11971-11979.
20. Murray,J.B., Collier,A.K. and Arnold,J.R.P. (1994) Anal. Biochem., 218, 177-184.
21. Puglisi,J.D. and Tinoco,I.,Jr (1989) Methods Enzymol., 180, 304-325.
22. Fox,J.J., Wempen,I., Hampton,A. and Doerr,I.L. (1958) J. Am. Chem. Soc., 80, 1669-1675.
23. Skilling,J. (1988) In Smith,C.R. and Erickson,E.J. (eds), Maximum Entropy and Bayesian Methods in Science and Engineering. Kluwer Academic Press, Dordrecht, The Netherlands, pp. 173-187.
24. Delaeter,J.R. (1991) Pure Appl. Chem., 63, 975-990.
25. Beckett,D. and Uhlenbeck,O.C. (1988) J. Mol. Biol., 204, 927-938
26. Lago,H., Fonseca,S.A., Murray,J.B., Stonehouse,N.J. and Stockley,P.G. (1998) Nucleic Acids Res., 26, 1337-1344.
27. Nordlund,T.M., Xu,D. and Evans,K.O. (1993) Biochemistry, 32, 12090-12095.
28. Beechem,J.M., Otto,M.R., Bloom,L.B., Eritja,R., Reha-Krantz,L.J. and Goodman,M.F. (1998) Biochemistry, 37, 10144-10155.
29. Law,S.M., Eritja,R., Goodman,M.F. and Breslauer,K.J. (1996) Biochemistry, 35, 12329-12337.
30. Carpenter,M.L. and Kneale,G.G. (1994) In Kneale,G.G. (ed.), Methods in Molecular Biology. DNA-Protein Interactions: Principles and Protocols. Humana Press, Totowa, NJ, Ch. 24, pp. 313-325.
31. Fazakerley,G.V., Quignard,E., Woisard,A., Guschlbauer,W., Van der Marel,G.A., Van Boom,J.H., Jones,M. and Radman,M. (1986) EMBO J., 5, 3697-3703.