Location of template on the human ribosome as revealed from data on cross-linking with reactive mRNA analogs

Biochemistry (Moscow)

Volumn 66, Issue 6, 2001, Pages 585-602

  Graifer, D M ^a   Karpova, G G ^a   Knorre, D G ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

Affinity cross linking; Human ribosome; mRNA analog; mRNA binding center; Ribosomal proteins; Ribosomal RNA

Indexed keywords

CROSS LINKING REAGENT; MESSENGER RNA; OLIGORIBONUCLEOTIDE; RNA 18S;

AFFINITY LABELING; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DNA TEMPLATE; HUMAN; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REVIEW; RIBOSOME;

AFFINITY LABELS; BASE SEQUENCE; CROSS-LINKING REAGENTS; HUMANS; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; OLIGORIBONUCLEOTIDES; RIBOSOMES; RNA, MESSENGER; RNA, RIBOSOMAL, 18S; TEMPLATES, GENETIC;

EID: 0035354167     PISSN: 00062979     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1010220627612     Document Type: Review

References (51)

1. Sergiev, P. V., Lavrik, I. N., Dokudovskaya, S. S., Dontsova, O. A., and Bogdanov, A. A. (1998) Biochemistry (Moscow), 63, 963-976.
2. Gabashvili, I. S., Agrawal, R. K., Spahn, C. M. T., Grassucci, R. A., Svergun, D. I., Frank, J., and Penczek, P. (2000) Cell, 100, 537-549.
3. Baranov, P. V., Kubarenko, A. V., Gurvich, O. L., Shamolina, T. A., and Brimacombe, R. (1999) Nucleic Acids Res., 27, 184-185.
4. Vladimirov, S. N., Babkina, G. T., Venijaminova, A. G., Gimautdinova, O. I., Zenkova, M. A., and Karpova, G. G. (1990) Biochim. Biophys. Acta, 1048, 245-256.
5. Karpova, G. G., and Knorre, D. G. (1991) Uspekhi Biol. Khim., 32, 3-49.
6. Karpova, G. G. (1987) Izv. SO AN SSSR, Ser. Khim. Nauk, 12, 82-86.
7. Ross, W. (1964) Biologically Active Compounds [in Russian], Meditsina, Moscow, pp. 30, 98, 100.
8. Levina, A. S., Tabatadze, D. R., Dobrikov, M. I., Shishkin, G. V., Khalimskaya, L. M., and Zarytova, V. F. (1996) Antisense Nucleic Acid Drug Dev., 6, 119-126.
9. Repkova, M. N., Venyaminova, A. G., and Zarytova, V. F. (1997) Nucleosides & Nucleotides, 16(7-9), 1797-1798.
10. Chernolovskaya, E. L., Cherepanov, P. P., Gorozhankin, A. V., Dobrikov, M. I., Vlassov, V. V., and Kobetz, N. D. (1993) Bioorg. Khim., 19, 889-896.
11. Graifer, D. M., Lyakhovich, A. V., Demeshkina, N. A., Ivanov, A. V., Repkova, M. N., Ven'yaminova, A. G., and Karpova, G. G. (1999) Mol. Biol. (Moscow), 33, 174-182.
12. Repkova, M. N., Ivanova, T. M., Komarova, N. I., Meschaninova, M. I., Kuznetsova, M. A., and Ven'yaminova, A. G. (1999) Bioorg. Khim., 25, 690-701.
13. Bhangu, R., Juzumiene, D., and Wollenzien, P. (1994) Biochemistry, 33, 3063-3070.
14. Graifer, D. M., Juzumiene, D. I., Karpova, G. G., and Wollenzien, P. (1994) Biochemistry, 33, 6201-6206.
15. Graifer, D. M., Juzumiene, D. I., Wollenzien, P., and Karpova, G. G. (1994) Biochemistry, 33, 3878-3884.
16. Graifer, D. M., Zenkova, M. A., Malygin, A. A., Mamaev, S. V., Mundus, D. A., and Karpova, G. G. (1990) J. Mol. Biol., 214, 121-128.
17. Malygin, A. A., Graifer, D. M., Bulygin, K. N., Zenkova, M. A., Yamkovoy, V. I., Stahl, J., and Karpova, G. G. (1994) Eur. J. Biochem., 226, 715-723.
18. Smolenskaya, I. A., Graifer, D. M., Ivanov, A. V., Vladimirov, S. N., Ven'yaminova, A. G., Repkova, M. N., Stahl, J., and Karpova, G. G. (1997) Mol. Biol. (Moscow), 31, 144-151.
19. Smolenskaya, I. A., Bulygin, K. N., Graifer, D. M., Ivanov, A. V., Ven'yaminova, A. G., Repkova, M. N., and Karpova, G. G. (1998) Mol. Biol. (Moscow), 32, 233-241.
20. Bulygin, K. N., Graifer, D. M., Repkova, M. N., Smolenskaya, J. A., Veniyaminova, A. G., and Karpova, G. G. (1997) RNA, 3, 1480-1485.
21. Graifer, D. M., Nekhai, S. Yu., Mundus, D. A., Fedorova, O. S., and Karpova, G. G. (1992) Biochim. Biophys. Acta, 1171, 56-64.
22. Watanabe, S. (1972) J. Mol. Biol., 67, 443-457.
23. Lill, R., Robertson, J. M., and Wintermeyer, W. (1986) Biochemistry, 25, 3245-3254.
24. Matasova, N. B., Vladimirov, S. N., Bulygin, K. N., Veniyaminova, A. G., Vratskikh, L. V., Mundus, D. A., Repkova, M. N., Yamkovoy, V. I., and Karpova, G. G. (1994) Mol. Biol. (Moscow), 28, 918-925.
25. Mundus, D. A., Bulygin, K. N., Yamkovoy, V. I., Malygin, A. A., Repkova, M. N., Vratskikh, L. V., Venijaminova, A. G., Vladimirov, S. N., and Karpova, G. G. (1993) Biochim. Biophys. Acta, 1173, 273-282.
26. Graifer, D. M., Demeshkina, N. A., Bulygin, K. N., Repkova, M. N., Ven'yaminova, A. G., and Karpova, G. G. (2000) Mol. Biol. (Moscow), 34, 270-276.
27. Stahl, J., and Kobetz, N. D. (1981) FEBS Lett., 123, 269-272.
28. Stahl, J., and Karpova, G. G. (1985) Biomed. Biochim. Acta, 44, 1057-1064.
29. Bulygin, K. N., Matasova, N. B., Graifer, D. M., Veniyaminova, A. G., Yamkovoy, V. I., Stahl, J., and Karpova, G. G. (1997) Biochim. Biophys. Acta, 1351, 325-332.
30. Matassova, N. B., Venjaminova, A. G., and Karpova, G. G. (1998) Biochim. Biophys. Acta, 1397, 231-239.
31. Demeshkina, N. A., Repkova, M. N., Ven'yaminova, A. G., Graifer, D. M., and Karpova, G. G. (2000) Mol. Biol. (Moscow), 34, 894-898.
32. Demeshkina, N., Repkova, M., Ven'yaminova, A., Graifer, D., and Karpova, G. (2000) RNA, 6, 1727-1736.
33. Gutell, R. (1993) Nucleic Acids Res., 21, 3051-3054.
34. Yoshizawa, S., Fourmy, D., and Puglisi, J. D. (1999) Science, 285, 1722-1725.
35. Cunningham, P. R., Nurse, K., Weitzmann, C. J., Negre, D., and Ofengand, J. (1992) Biochemistry, 31, 7629-7637.
36. Rinke-Appel, J., Junke, N., Brimacombe, R., Lavrik, I., Dokudovskaya, S., Dontsova, O., and Bogdanov, A. (1994) Nucleic Acids Res., 22, 3018-3025.
37. Sergiev, P. V., Lavrik, I. N., Wlasoff, V. A., Dokudovskaya, S. S., Dontsova, O. A., Bogdanov, A. A., and Brimacombe, R. (1997) RNA, 3, 464-475.
38. Mundus, D., and Wollenzien, P. (1998) RNA, 4, 1373-1385.
39. Moazed, D., and Noller, H. F. (1990) J. Mol. Biol., 211, 135-145.
40. Woodcock, J., Moazed, D., Cannon, M., Davies, J., and Noller, H. F. (1991) EMBO J., 10, 3099-3103.
41. Tapprich, W. E., Goss, D. J., and Dahlberg, A. E. (1989) Proc. Natl. Acad. Sci. USA, 86, 4927-4931.
42. Juzumiene, D. I., Shapkina, T. G., and Wollenzien, P. (1995) J. Biol. Chem., 270, 12794-12800.
43. Neefs, J.-M., van de Peer, Y., Hendriks, L., and DeWachter, R. (1990) Nucleic Acids Res., 18 (Suppl.), 2237-2242.
44. Evstafieva, A. G., Shatsky, I. N., Bogdanov, A. A., Semenkov, Yu. P., and Vasiliev, V. D. (1983) EMBO J., 2, 799-804.
45. Bhangu, R., and Wollenzien, P. (1992) Biochemistry, 31 5937-5944.
46. Rinke-Appel, J., Junke, N., Stade, K., and Brimacombe, R. (1991) EMBO J., 10, 2195-2202.
47. Dontsova, O., Kopylov, A., and Brimacombe, R. (1991) EMBO J., 10, 2613-2620.
48. Dontsova, O. A., Rosen, K. V., Bogdanova, S. L., Skripkin, E. A., Kopylov, A. M., and Bogdanov, A. A. (1992) Biochimie, 74, 363-371.
49. Wool, I. G., Chan, Y.-L., and Glueck, A. (1996) Mammalian Ribosomes: the Structure and the Evolution of the Proteins, in Translational Control (Hershey, J. W. B., Matthews, M. B., and Sonenberg, N., eds.) Cold Spring Harbor Laboratory Press, pp. 685-732.
50. Clemons, W. M., May, J. L. C., Wimberly, B. T., McCutcheon, J. P., Capel, M. S., and Ramakrishnan, V. (1999) Nature, 400, 833-840.
51. Wimberly, B. T., Brodersen, D. E., Clemons, W. M., Jr., Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T., and Ramakrishnan, V. (2000) Nature, 407, 327-339.