메뉴 건너뛰기




Volumn 3, Issue 5, 1997, Pages 464-475

The path of mRNA through the bacterial ribosome: A site-directed crosslinking study using new photoreactive derivatives of guanosine and uridine

Author keywords

3D arrangement of rRNA; mRNA analogues; photo crosslinking; ribosome function

Indexed keywords

MESSENGER RNA;

EID: 0030923759     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (97)

References (36)
  • 1
    • 0026635866 scopus 로고
    • Binding track in the E. coli ribosome for mRNAs of different sequences
    • Bhangu R, Wollenzien P. 1992. Binding track in the E. coli ribosome for mRNAs of different sequences. Biochemistry 31:5937-5944.
    • (1992) Biochemistry , vol.31 , pp. 5937-5944
    • Bhangu, R.1    Wollenzien, P.2
  • 2
    • 0026716944 scopus 로고
    • Application of 3-[3-(3-(tri-fluoromethyl)-diazirin-3-yl)-phenyl]2,3-dihydroxypropionic acid; carbene generating, cleavable crosslinking agent for photo-affinity labelling
    • Bochkarev D, Kogon A. 1992. Application of 3-[3-(3-(tri-fluoromethyl)-diazirin-3-yl)-phenyl]2,3-dihydroxypropionic acid; carbene generating, cleavable crosslinking agent for photo-affinity labelling. Anal Biochem 204:90-95.
    • (1992) Anal Biochem , vol.204 , pp. 90-95
    • Bochkarev, D.1    Kogon, A.2
  • 3
    • 0023761756 scopus 로고
    • Transient association of newly synthesized unfolded proteins with the heat-shock GroEL protein
    • Bochkareva ES, Lissin NM, Girshovich AS. 1988. Transient association of newly synthesized unfolded proteins with the heat-shock GroEL protein. Nature 336:254-257.
    • (1988) Nature , vol.336 , pp. 254-257
    • Bochkareva, E.S.1    Lissin, N.M.2    Girshovich, A.S.3
  • 4
    • 0029044829 scopus 로고
    • The structure of ribosomal RNA: A three dimensional jigsaw puzzle
    • Brimacombe R. 1995. The structure of ribosomal RNA: A three dimensional jigsaw puzzle. Eur J Biochem 230:365-383.
    • (1995) Eur J Biochem , vol.230 , pp. 365-383
    • Brimacombe, R.1
  • 5
    • 0024278056 scopus 로고
    • A detailed model of the three-dimensional structure of E. coli 16S ribosomal RNA in situ in the 30S subunit
    • Brimacombe R, Atmadaja J, Steiege W, Schüler D. 1988. A detailed model of the three-dimensional structure of E. coli 16S ribosomal RNA in situ in the 30S subunit. J Mol Biol 199:115-136.
    • (1988) J Mol Biol , vol.199 , pp. 115-136
    • Brimacombe, R.1    Atmadaja, J.2    Steiege, W.3    Schüler, D.4
  • 6
    • 0024360942 scopus 로고
    • Alternative occupancy of a dual ribosomal binding site by mRNA affected by translational initiation factors
    • Canonco MA, Gualerzi CO, Pon CL. 1989. Alternative occupancy of a dual ribosomal binding site by mRNA affected by translational initiation factors. Eur J Biochem 182:501-506.
    • (1989) Eur J Biochem , vol.182 , pp. 501-506
    • Canonco, M.A.1    Gualerzi, C.O.2    Pon, C.L.3
  • 7
    • 0028284844 scopus 로고
    • The decoding region of 16S RNA; a cross-linking study at position 32 in the anticodon loop
    • Doering T, Mitchell P, Osswald M, Bochkariov D, Brimacombe R. 1994. The decoding region of 16S RNA; a cross-linking study at position 32 in the anticodon loop. EMBO J 13:2677-2685.
    • (1994) EMBO J , vol.13 , pp. 2677-2685
    • Doering, T.1    Mitchell, P.2    Osswald, M.3    Bochkariov, D.4    Brimacombe, R.5
  • 8
    • 0026681280 scopus 로고
    • Three widely-seperated positions in the 16S RNA lie in or close to the ribosomal decoding region: A site-directed cross-linking study with mRNA analogues
    • Dontsova O, Dokudovskaya S, Kopylov A, Bogdanov A, Rinke-Appel J, Jünke N, Brimacombe R. 1992. Three widely-seperated positions in the 16S RNA lie in or close to the ribosomal decoding region: A site-directed cross-linking study with mRNA analogues. EMBO J 11:3105-3116.
    • (1992) EMBO J , vol.11 , pp. 3105-3116
    • Dontsova, O.1    Dokudovskaya, S.2    Kopylov, A.3    Bogdanov, A.4    Rinke-Appel, J.5    Jünke, N.6    Brimacombe, R.7
  • 9
    • 0025911842 scopus 로고
    • The location of mRNA in the ribosomal 30S initiation complex: Site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon
    • Dontsova OA,Kopylov AM, Brimacombe R. 1991. The location of mRNA in the ribosomal 30S initiation complex: Site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon. EMBO J 10:2613-2620.
    • (1991) EMBO J , vol.10 , pp. 2613-2620
    • Dontsova, O.A.1    Kopylov, A.M.2    Brimacombe, R.3
  • 10
    • 0002855274 scopus 로고
    • 4-Thiouridine as an intrinsic photoaffinity probe of nucleic acid structure and interactions
    • Morrison H, ed. New York: Wiley Inc.
    • Favre A. 1990. 4-Thiouridine as an intrinsic photoaffinity probe of nucleic acid structure and interactions. In: Morrison H, ed. Bioorganic photochemistry: Photochemistry and the nucleic acids, V1. New York: Wiley Inc. pp 380-420.
    • (1990) Bioorganic Photochemistry: Photochemistry and the Nucleic Acids, V1 , pp. 380-420
    • Favre, A.1
  • 12
    • 0030034288 scopus 로고    scopus 로고
    • DNA polymerase III: Running rings around the fork
    • Herendeen DR, Kelly TJ. 1996. DNA polymerase III: Running rings around the fork. Cell 84:5-8.
    • (1996) Cell , vol.84 , pp. 5-8
    • Herendeen, D.R.1    Kelly, T.J.2
  • 15
    • 0029383434 scopus 로고
    • From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors
    • La Teana A, Gualerzi CO, Brimacombe R. 1995. From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors. RNA 1:772-782.
    • (1995) RNA , vol.1 , pp. 772-782
    • La Teana, A.1    Gualerzi, C.O.2    Brimacombe, R.3
  • 16
    • 0026655170 scopus 로고
    • How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography
    • Lim V, Venclovas C, Spirin A, Brimacombe R, Mitchell P, Mueller F. 1992. How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography. Nucleic Acids Res 20:2627-2637.
    • (1992) Nucleic Acids Res , vol.20 , pp. 2627-2637
    • Lim, V.1    Venclovas, C.2    Spirin, A.3    Brimacombe, R.4    Mitchell, P.5    Mueller, F.6
  • 17
    • 0027161759 scopus 로고
    • Site-directed cross-linking studies on the E. coli tRNA-ribosome complex; determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA
    • Mitchell P, Stade K, Osswald M, Brimacombe R. 1993. Site-directed cross-linking studies on the E. coli tRNA-ribosome complex; determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA. Nucleic Acids Res 21:887-896.
    • (1993) Nucleic Acids Res , vol.21 , pp. 887-896
    • Mitchell, P.1    Stade, K.2    Osswald, M.3    Brimacombe, R.4
  • 18
    • 0025070318 scopus 로고
    • Binding of tRNA to the ribosomal a and P sites protects two distinct sets of nucleotides in 16S rRNA
    • Moazed D, Noller HF. 1990. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16S rRNA. J Mol Biol 211:135-145.
    • (1990) J Mol Biol , vol.211 , pp. 135-145
    • Moazed, D.1    Noller, H.F.2
  • 19
    • 0022470564 scopus 로고
    • Rapid chemical probing of conformation in 16S ribosomal RNA and 30S subunits using primer extension
    • Moazed D, Stern S, Noller HF 1986. Rapid chemical probing of conformation in 16S ribosomal RNA and 30S subunits using primer extension. J Mol Biol 187:399-416.
    • (1986) J Mol Biol , vol.187 , pp. 399-416
    • Moazed, D.1    Stern, S.2    Noller, H.F.3
  • 21
    • 0028875725 scopus 로고
    • Three-dimensional structure of E. coli core polymerase: Promoter binding and elongation conformations of the enzyme
    • Polyakov A, Severinova E, Darst SA. 1995. Three-dimensional structure of E. coli core polymerase: Promoter binding and elongation conformations of the enzyme. Cell 83:365-373.
    • (1995) Cell , vol.83 , pp. 365-373
    • Polyakov, A.1    Severinova, E.2    Darst, S.A.3
  • 22
    • 0025737972 scopus 로고
    • A functional pseudoknot in 16S ribosomal RNA
    • Powers T, Noller HF. 1991 A functional pseudoknot in 16S ribosomal RNA. EMBO J 10:2203-2214.
    • (1991) EMBO J , vol.10 , pp. 2203-2214
    • Powers, T.1    Noller, H.F.2
  • 24
    • 0016210827 scopus 로고
    • Die Synthese von Purrinnucleosid-6-Sulfonaten
    • Rackwitz H, Sheit K. 1974. Die Synthese von Purrinnucleosid-6-Sulfonaten. Chem Ber 107:2284-2294.
    • (1974) Chem Ber , vol.107 , pp. 2284-2294
    • Rackwitz, H.1    Sheit, K.2
  • 26
    • 0027214113 scopus 로고
    • Site directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of crosslinks from all positions between +1 and +16 on the mRNA, down-stream from the decoding site
    • Rinke-Appel J, Jünke N, Dokudovskaya S, Dontsova O, Bogdanov A. Brimacombe R. 1993. Site directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of crosslinks from all positions between +1 and +16 on the mRNA, down-stream from the decoding site. Nucleic Acids Res 21:2853-2859.
    • (1993) Nucleic Acids Res , vol.21 , pp. 2853-2859
    • Rinke-Appel, J.1    Jünke, N.2    Dokudovskaya, S.3    Dontsova, O.4    Bogdanov, A.5    Brimacombe, R.6
  • 27
    • 0029444686 scopus 로고
    • The ribosomal environment of tRNA: Crosslinks to rRNA from positions 8 and 20:1 in the central fold of tRNA located at the A, P, or E site
    • Rinke-Appel J, Jünke N, Osswald M, Brimacombe R. 1995. The ribosomal environment of tRNA: Crosslinks to rRNA from positions 8 and 20:1 in the central fold of tRNA located at the A, P, or E site. RNA 1:1018-1028.
    • (1995) RNA , vol.1 , pp. 1018-1028
    • Rinke-Appel, J.1    Jünke, N.2    Osswald, M.3    Brimacombe, R.4
  • 28
    • 0024372916 scopus 로고
    • Sudstitution of an invariant nucleotide at the base of the highly-conserved 530-loop of 15S rRNA causes suppression of yeast mitocondrial ochre mutations
    • Shen Z, Fox TD. 1989. Sudstitution of an invariant nucleotide at the base of the highly-conserved 530-loop of 15S rRNA causes suppression of yeast mitocondrial ochre mutations. Nucleic Acids Res 17:4535-1539.
    • (1989) Nucleic Acids Res , vol.17 , pp. 4535-11539
    • Shen, Z.1    Fox, T.D.2
  • 29
    • 0021760461 scopus 로고
    • Antoibiotic resistance mutations in 16S and 23S ribosomal RNA genes of E. coli
    • Sigmund CD, Ettayebi M, Morgan EA. 1984. Antoibiotic resistance mutations in 16S and 23S ribosomal RNA genes of E. coli. Nucleic Acids Res 12:4653-4663.
    • (1984) Nucleic Acids Res , vol.12 , pp. 4653-4663
    • Sigmund, C.D.1    Ettayebi, M.2    Morgan, E.A.3
  • 30
    • 0024785660 scopus 로고
    • Site-directed cross-linking of mRNA analogues to the E. coli ribosome; identification of 30S ribosomal components that can be cross-linked to mRNA at various points 5′ with respect to the decoding site
    • Stade K, Rinke-Appel J, Brimacombe R. 1989. Site-directed cross-linking of mRNA analogues to the E. coli ribosome; identification of 30S ribosomal components that can be cross-linked to mRNA at various points 5′ with respect to the decoding site. Nucleic Acids Res 17:9889-9908.
    • (1989) Nucleic Acids Res , vol.17 , pp. 9889-9908
    • Stade, K.1    Rinke-Appel, J.2    Brimacombe, R.3
  • 33
    • 0024293439 scopus 로고
    • Model for the three-dimensional folding of 16S ribosomal RNA
    • Stern S, Weiser B, Noller HF. 1988. Model for the three-dimensional folding of 16S ribosomal RNA. J Mol Biol 204:447-481.
    • (1988) J Mol Biol , vol.204 , pp. 447-481
    • Stern, S.1    Weiser, B.2    Noller, H.F.3
  • 34
    • 0025092680 scopus 로고
    • Codon recognition in polypeptide chain termination; site-directed cross-linking of termination codon to E. coli release factor 2
    • Tate W, Greuer B, Brimacombe R. 1990. Codon recognition in polypeptide chain termination; site-directed cross-linking of termination codon to E. coli release factor 2. Nucleic Acids Res 18:6537-6544.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6537-6544
    • Tate, W.1    Greuer, B.2    Brimacombe, R.3
  • 35
    • 0028929659 scopus 로고
    • Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site
    • Von Ahsen U, Noller HF. 1995. Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site. Science 267:234-237.
    • (1995) Science , vol.267 , pp. 234-237
    • Von Ahsen, U.1    Noller, H.F.2
  • 36
    • 0343081929 scopus 로고
    • Phe derivatives containing azidoadenosine at the 3′ end of the acceptor arm: A new model of the tRNA-ribosome complex
    • Phe derivatives containing azidoadenosine at the 3′ end of the acceptor arm: A new model of the tRNA-ribosome complex. Proc Natl Acad Sci USA 86:5232-5236.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 5232-5236
    • Wower, J.1    Hixon, S.S.2    Zimmermann, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.