The WWE domain: A common interaction module in protein ubiquitination and ADP ribosylation

Trends in Biochemical Sciences

Volumn 26, Issue 5, 2001, Pages 273-275

  Aravind, L ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DIPHOSPHATE RIBOSE; NOTCH RECEPTOR; PROTEIN DELTEX; UBIQUITIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONJUGATION; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; REGULATORY MECHANISM; SEQUENCE ANALYSIS;

EID: 0035338814     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0004(01)01787-X     Document Type: Short Survey

References (21)

1. Hershko A., Ciechanover A. The ubiquitin system. Annu. Rev. Biochem. 67:1998;425-479.
2. Joazeiro C.A., Weissman A.M. RING finger proteins: mediators of ubiquitin ligase activity. Cell. 102:2000;549-552.
3. Jackson P.K., et al. The lore of the RINGs: substrate recognition and catalysis by ubiquitin ligases. Trends Cell Biol. 10:2000;429-439.
4. Aravind L., Koonin E.V. The U box is a modified RING finger - a common domain in ubiquitination. Curr. Biol. 10:2000;R132-R134.
5. D'Amours D., et al. Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions. Biochem. J. 342:1999;249-268.
6. Matsuno K., et al. Human deltex is a conserved regulator of Notch signalling. Nat.Genet. 19:1998;74-78.
7. Leverson J.D., et al. The APC11 RING-H2 finger mediates E2-dependent ubiquitination. Mol. Biol. Cell. 11:2000;2315-2325.
8. Cornell M., et al. The Drosophila melanogaster suppressor of deltex gene, a regulator of the Notch receptor signaling pathway, is an E3 class ubiquitin ligase. Genetics. 152:1999;567-576.
9. Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25:1997;3389-3402.
10. Rost B., Sander C. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232:1993;584-599.
11. Jones D.T. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292:1999;195-202.
12. Lo Conte L., et al. SCOP: a structural classification of proteins database. Nucl. Acids Res. 28:2000;257-259.
13. Hofmann K., Bucher P. The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem. Sci. 21:1996;172-173.
14. Diederich R.J., et al. Cytosolic interaction between deltex and Notch ankyrin repeats implicates deltex in the Notch signaling pathway. Development. 120:1994;473-481.
15. Lee J.W., et al. Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor. Mol. Endocrinol. 9:1995;243-254.
16. Bazan J.F., Koch-Nolte F. Sequence and structural links between distant ADP-ribosyltransferase families. Adv. Exp. Med. Biol. 419:1997;99-107.
17. Aravind L., Koonin E.V. SAP - aputative DNA-binding motif involved in chromosomal organization. Trends Biochem. Sci. 25:2000;112-114.
18. Bork P., et al. A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins. FASEB J. 11:1997;68-76.
19. Schultz J., et al. SAM as a protein interaction domain involved in developmental regulation. Protein Sci. 6:1997;249-253.
20. Bork P., Rohde K. More von Willebrand factor type A domains? Sequence similarities with malaria thrombospondin-related anonymous protein, dihydropyridine-sensitive calcium channel and inter-alpha-trypsin inhibitor. Biochem.J. 279:1991;908-910.
21. Thompson J.D., et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.