A hierarchical, building-block-based computational scheme for protein structure prediction

IBM Journal of Research and Development

Volumn 45, Issue 3-4, 2001, Pages 513-523

  Tsai, C J ^a   Ma, B ^a   Sham, Y Y ^a   Kumar, S ^a   Wolfson, H J ^a   Nussinov, R ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; ITERATIVE METHODS; MATHEMATICAL MODELS;

ANATOMY TREE; BUILDING BLOCK PROTEIN FOLDING MODEL;

PROTEINS;

EID: 0035327482     PISSN: 00188646     EISSN: None     Source Type: Journal    
DOI: 10.1147/rd.453.0513     Document Type: Article

References (27)

1. Progress in protein structure prediction: Assessment of CASP3
2. Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
3. Folding funnels, binding funnels and protein function
4. Anatomy of protein structures: Visualizing how a 1-D protein chain folds into a 3-D shape
5. The protein data bank: A computer-based archival file for macromolecular structures
6. Protein folding via binding, and vice versa
7. Is protein folding hierarchic? I. Local structure and peptide folding
8. Structural patterns in globular proteins
9. Correlation of observed fold frequency with the occurrence of local structural motifs
10. Hydrophobic folding units derived from dissimilar monomer structures and their interactions
11. Hydrophobic folding units at protein-protein interfaces: Implications to protein folding and protein-protein association
12. Foldons, protein structural modules, and exons
13. Folding unit in globular proteins
14. Location of structural domains in proteins
15. Dominant forces in protein folding
16. Probing minimal independent folding units in dihydrofolate reductase by molecular dissection
17. Crystal structure of inorganic pyrophosphatase from Thermus Thermophilus
18. X-ray crystallographic studies of recombinant inorganic pyrophosphatase from Escherichia coli
19. Crystal structure of the haemopexin-like C-terminal domain of gelatinase A
20. pH-dependent structural changes in the active site of p-hydroxybenzoate hydroxylase point to the importance of proton and water movements during catalysis
21. Distinguishing between sequential and nonsequentially folded proteins: Implications for folding and misfolding
22. High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer
23. The glycine-rich loop of adenylate kinase forms a giant anion hole
24. Prediction of local structure in proteins using a library of sequence-structure motifs
25. CHARMM: A program for macromolecular energy, minimization and dynamics calculations
26. Effective energy function for proteins in solution
27. Protein folding and function: The N-terminal fragment in adenylate kinase