-
1
-
-
0030334822
-
Conformational investigation of designed short linear peptides able to fold into β-hairpin structures in aqueous solution
-
Alba ED, Jimenez MA, Rico M, Nieto JL. 1995. Conformational investigation of designed short linear peptides able to fold into β-hairpin structures in aqueous solution. Folding Design 1:133-144.
-
(1995)
Folding Design
, vol.1
, pp. 133-144
-
-
Alba, E.D.1
Jimenez, M.A.2
Rico, M.3
Nieto, J.L.4
-
2
-
-
0015859467
-
Principles that govern the folding of protein chain
-
Anfinsen CB. 1973. Principles that govern the folding of protein chain. Science 181:223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
3
-
-
0028286471
-
Kinetics versus thermodynamics in protein folding
-
Baker D, Agard DA. 1994. Kinetics versus thermodynamics in protein folding. Biochemistry 33:7505-7509.
-
(1994)
Biochemistry
, vol.33
, pp. 7505-7509
-
-
Baker, D.1
Agard, D.A.2
-
4
-
-
0032972986
-
Is protein folding hierarchic? I. Local structure and peptide folding
-
Baldwin RL, Rose GD. 1999. Is protein folding hierarchic? I. Local structure and peptide folding. Trends Biochem Sci 24:26-33.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 26-33
-
-
Baldwin, R.L.1
Rose, G.D.2
-
5
-
-
0001366381
-
From topographies to dynamics on multidimensional potential energy surfaces of atomic clusters
-
Ball KD, Berry RS, Kunz RE, Li FY, Proykova A, Wales DJ. 1996. From topographies to dynamics on multidimensional potential energy surfaces of atomic clusters. Science 271:963-966.
-
(1996)
Science
, vol.271
, pp. 963-966
-
-
Ball, K.D.1
Berry, R.S.2
Kunz, R.E.3
Li, F.Y.4
Proykova, A.5
Wales, D.J.6
-
6
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer-based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer E.F., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
7
-
-
0031991297
-
Structural classification of αββ and ββα supersecondary structure units in proteins
-
Boutonnet NS, Kajava AV, Rooman MJ. 1998, Structural classification of αββ and ββα supersecondary structure units in proteins. Proteins 30:193-212.
-
(1998)
Proteins
, vol.30
, pp. 193-212
-
-
Boutonnet, N.S.1
Kajava, A.V.2
Rooman, M.J.3
-
8
-
-
0026607096
-
Early hydrogen-bonding events in the folding reaction of ubiquitin
-
Briggs MS, Roder H. 1992. Early hydrogen-bonding events in the folding reaction of ubiquitin. Proc Natl Acad Sci USA 89:2017-2021.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2017-2021
-
-
Briggs, M.S.1
Roder, H.2
-
9
-
-
0031430923
-
Recognition between disordered states: Kinetics of the self-assembly of thioredoxin fragments
-
Chaffotte AF, Li JH, Georgescu RE, Goldberg ME, Tasayco ML. 1997. Recognition between disordered states: Kinetics of the self-assembly of thioredoxin fragments. Biochemistry 36:16040-16048.
-
(1997)
Biochemistry
, vol.36
, pp. 16040-16048
-
-
Chaffotte, A.F.1
Li, J.H.2
Georgescu, R.E.3
Goldberg, M.E.4
Tasayco, M.L.5
-
10
-
-
0025370815
-
Dominant forces in protein folding
-
Dill KA. 1990. Dominant forces in protein folding. Biochemistry 31:7134-7155.
-
(1990)
Biochemistry
, vol.31
, pp. 7134-7155
-
-
Dill, K.A.1
-
11
-
-
1842298212
-
From Levinthal to pathways to funnels
-
Dill K, Chan HS. 1997. From Levinthal to pathways to funnels. Nature Struct Biol 4:10-19.
-
(1997)
Nature Struct Biol
, vol.4
, pp. 10-19
-
-
Dill, K.1
Chan, H.S.2
-
12
-
-
0026768829
-
Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding I. Myohemerythrin
-
Dyson HJ, Merutka G, Waltho JP, Lerner RA, Wright PE. 1992. Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding I. Myohemerythrin. J Mol Biol 226:795-817.
-
(1992)
J Mol Biol
, vol.226
, pp. 795-817
-
-
Dyson, H.J.1
Merutka, G.2
Waltho, J.P.3
Lerner, R.A.4
Wright, P.E.5
-
13
-
-
0026685018
-
Stable substructures of eightfold βα-barrel proteins: Fragment complementation of phosphoribosylanthranilate isomerase
-
Eder J, Kirschner K. 1992. Stable substructures of eightfold βα-barrel proteins: Fragment complementation of Phosphoribosylanthranilate Isomerase. Biochemistry 31:3617-3625.
-
(1992)
Biochemistry
, vol.31
, pp. 3617-3625
-
-
Eder, J.1
Kirschner, K.2
-
14
-
-
0030042460
-
Protein folding in the cell: Competing models of chaperonin function
-
Ellis RJ, Hartl FU. 1996. Protein folding in the cell: Competing models of chaperonin function. FASEB J 10:20-26.
-
(1996)
FASEB J
, vol.10
, pp. 20-26
-
-
Ellis, R.J.1
Hartl, F.U.2
-
15
-
-
0030750584
-
In vivo observation of polypeptide flux through the bacterial chaperonin system
-
Ewall KL, Hendrick JP, Houry WA, Hartl FU. 1997. In vivo observation of polypeptide flux through the bacterial chaperonin system. Cell 90:491-500.
-
(1997)
Cell
, vol.90
, pp. 491-500
-
-
Ewall, K.L.1
Hendrick, J.P.2
Houry, W.A.3
Hartl, F.U.4
-
16
-
-
0025124588
-
Expression of human plasminogen activator inhibitor type-1 (PAI-1) in Escherichia coli as a soluble protein comprised of active and latent forms. Isolation and crystallization of latent PAI-1
-
Franke AE, Danley DE, Kaczmarek FS, Hawrylik SJ, Gerard RD, Lee SE, Geoghegan KF. 1990. Expression of human plasminogen activator inhibitor type-1 (PAI-1) in Escherichia coli as a soluble protein comprised of active and latent forms. Isolation and crystallization of latent PAI-1. Biochim Biophys Acta 1037:16-23.
-
(1990)
Biochim Biophys Acta
, vol.1037
, pp. 16-23
-
-
Franke, A.E.1
Danley, D.E.2
Kaczmarek, F.S.3
Hawrylik, S.J.4
Gerard, R.D.5
Lee, S.E.6
Geoghegan, K.F.7
-
17
-
-
0028198111
-
How N-linked oligosaccharides affect glycoprotein folding in the endoplasmic reticulum
-
Helenius A. 1994. How N-linked oligosaccharides affect glycoprotein folding in the endoplasmic reticulum. Mol Biol Cell 5:253-265.
-
(1994)
Mol Biol Cell
, vol.5
, pp. 253-265
-
-
Helenius, A.1
-
18
-
-
0027214204
-
Folding in vivo of bacterial cytoplasmic proteins: Role of GroEL
-
Horwich AL, Low KB, Fenton WA, Hirshfield IN, Furtak K. 1993. Folding in vivo of bacterial cytoplasmic proteins: Role of GroEL. Cell 74:909-917.
-
(1993)
Cell
, vol.74
, pp. 909-917
-
-
Horwich, A.L.1
Low, K.B.2
Fenton, W.A.3
Hirshfield, I.N.4
Furtak, K.5
-
19
-
-
0031889752
-
Domain assignment for protein structures using a consensus approach: Characterization and analysis
-
Jones S, Stewart M, Michie A, Swindells MB, Orengo C, Thornton JM. 1998. Domain assignment for protein structures using a consensus approach: Characterization and analysis. Protein Sci 7:233-242.
-
(1998)
Protein Sci
, vol.7
, pp. 233-242
-
-
Jones, S.1
Stewart, M.2
Michie, A.3
Swindells, M.B.4
Orengo, C.5
Thornton, J.M.6
-
20
-
-
0028327236
-
Protein folding dynamics: The diffusion-collision model and experimental data
-
Karplus M, Weaver DL. 1994. Protein folding dynamics: The diffusion-collision model and experimental data. Protein Sci 3:650-668.
-
(1994)
Protein Sci
, vol.3
, pp. 650-668
-
-
Karplus, M.1
Weaver, D.L.2
-
21
-
-
0031214378
-
An exceptionally stable helix from the ribosomal protein L9: Implications for protein folding and stability
-
Kuhlman B, Yang HY, Boice JA, Fairman R, Raleigh DP. 1997. An exceptionally stable helix from the ribosomal protein L9: Implications for protein folding and stability. J Mol Biol 270:640-647.
-
(1997)
J Mol Biol
, vol.270
, pp. 640-647
-
-
Kuhlman, B.1
Yang, H.Y.2
Boice, J.A.3
Fairman, R.4
Raleigh, D.P.5
-
22
-
-
0031576341
-
Complementation of peptide fragments of the single domain protein chymotrypsin inhibitor 2
-
Ladurner AG, Itzhaki LS, Gay FDP, Fersht AR. 1997. Complementation of peptide fragments of the single domain protein chymotrypsin inhibitor 2. J Mol Biol 273:317-329.
-
(1997)
J Mol Biol
, vol.273
, pp. 317-329
-
-
Ladurner, A.G.1
Itzhaki, L.S.2
Gay, F.D.P.3
Fersht, A.R.4
-
23
-
-
0015222647
-
The interpretation of protein structures. Estimation of static accessibility
-
Lee BK, Richards FM. 1971. The interpretation of protein structures. Estimation of static accessibility. J Mol Biol 55:379-400.
-
(1971)
J Mol Biol
, vol.55
, pp. 379-400
-
-
Lee, B.K.1
Richards, F.M.2
-
24
-
-
0030777763
-
Exploring the limits of nearest neighbor secondary structure prediction
-
Levin JM. 1997. Exploring the limits of nearest neighbor secondary structure prediction. Protein Eng 10:771-776.
-
(1997)
Protein Eng
, vol.10
, pp. 771-776
-
-
Levin, J.M.1
-
25
-
-
0002006297
-
Are there pathways for protein folding?
-
Levinthal C. 1968. Are there pathways for protein folding? J Chim Phys 65:44-45.
-
(1968)
J Chim Phys
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
26
-
-
0030050614
-
A quantitative assessment of the role of the chaperonin proteins in protein folding in vivo
-
Lorimer GH. 1996. A quantitative assessment of the role of the chaperonin proteins in protein folding in vivo. FASEB J 10:5-9.
-
(1996)
FASEB J
, vol.10
, pp. 5-9
-
-
Lorimer, G.H.1
-
27
-
-
0026742164
-
Detection and characterization of an early folding intermediate of T4 lysozyme using pulsed hydrogen exchange and two-dimensional NMR
-
Lu J, Dahlquist FW. 1992. Detection and characterization of an early folding intermediate of T4 lysozyme using pulsed hydrogen exchange and two-dimensional NMR. Biochemistry 31:4749-4156.
-
(1992)
Biochemistry
, vol.31
, pp. 4749-14156
-
-
Lu, J.1
Dahlquist, F.W.2
-
30
-
-
0030844281
-
Recombination of protein domains facilitated by co-translational folding in eukarykotes
-
Netzer WJ, Hartl FU. 1997. Recombination of protein domains facilitated by co-translational folding in eukarykotes. Nature 388:343-349.
-
(1997)
Nature
, vol.388
, pp. 343-349
-
-
Netzer, W.J.1
Hartl, F.U.2
-
31
-
-
0031565728
-
The foldon universe: A survey of structural similarity and self-recognition of independently folding units
-
Panchenko AR, Luthey-Schulten Z, Cole R, Wolynes PG. 1997. The foldon universe: A survey of structural similarity and self-recognition of independently folding units. J Mol Biol 272:95-105.
-
(1997)
J Mol Biol
, vol.272
, pp. 95-105
-
-
Panchenko, A.R.1
Luthey-Schulten, Z.2
Cole, R.3
Wolynes, P.G.4
-
32
-
-
0029922493
-
Foldons, protein structural modules, and exons
-
Panchenko AR, Luthey-Schulten Z, Wolynes PG. 1996. Foldons, protein structural modules, and exons. Proc Natl Acad Sci USA 93:2008-2013.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 2008-2013
-
-
Panchenko, A.R.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
33
-
-
0030840018
-
Circularly permuted β-lactamase from Staphylococcus aureus PC1
-
Pieper U, Hayakawa K, Li Z, Herzberg O. 1997. Circularly permuted β-lactamase from Staphylococcus aureus PC1. Biochemistry 36:8767-8774.
-
(1997)
Biochemistry
, vol.36
, pp. 8767-8774
-
-
Pieper, U.1
Hayakawa, K.2
Li, Z.3
Herzberg, O.4
-
34
-
-
0030010408
-
Intermediate states in protein folding
-
Privalov PL. 1996. Intermediate states in protein folding. J Mol Biol 258:707-725.
-
(1996)
J Mol Biol
, vol.258
, pp. 707-725
-
-
Privalov, P.L.1
-
35
-
-
0029891313
-
De novo design and structural analysis of a model b-hairpin peptide system
-
Ramirez-Alvarado M, Blanco FJ, Serrano L. 1996. De novo design and structural analysis of a model b-hairpin peptide system. Nature Struct Biol 3:604-612.
-
(1996)
Nature Struct Biol
, vol.3
, pp. 604-612
-
-
Ramirez-Alvarado, M.1
Blanco, F.J.2
Serrano, L.3
-
36
-
-
0023927904
-
Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure
-
Richards FM, Kundrot CE. 1988. Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure. Proteins 3:71-84.
-
(1988)
Proteins
, vol.3
, pp. 71-84
-
-
Richards, F.M.1
Kundrot, C.E.2
-
37
-
-
0026674246
-
Predicting protein secondary structure with a nearest-neighbor algorithm
-
Salzberg S, Cost S. 1992. Predicting protein secondary structure with a nearest-neighbor algorithm. J Mol Biol 227:371-374.
-
(1992)
J Mol Biol
, vol.227
, pp. 371-374
-
-
Salzberg, S.1
Cost, S.2
-
38
-
-
0027248899
-
Peptide models of protein folding initiation sites. 3. The G-H helical hairpin of myoglobin
-
Shin JC, Merutka G, Waltho JP, Tennant LL, Dyson HJ, Wright PE. 1993. Peptide models of protein folding initiation sites. 3. The G-H helical hairpin of myoglobin. Biochemistry 32:6356-6364.
-
(1993)
Biochemistry
, vol.32
, pp. 6356-6364
-
-
Shin, J.C.1
Merutka, G.2
Waltho, J.P.3
Tennant, L.L.4
Dyson, H.J.5
Wright, P.E.6
-
39
-
-
0015866154
-
Environment and exposure to solvent of protein atoms
-
Shrake A, Rupley JA. 1973. Environment and exposure to solvent of protein atoms. J Mol Biol 79:351-371.
-
(1973)
J Mol Biol
, vol.79
, pp. 351-371
-
-
Shrake, A.1
Rupley, J.A.2
-
40
-
-
0028965118
-
Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments
-
Solovyev VV, Salamov AA. 1995. Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments. J Mol Biol 247:11-15.
-
(1995)
J Mol Biol
, vol.247
, pp. 11-15
-
-
Solovyev, V.V.1
Salamov, A.A.2
-
41
-
-
0030461645
-
Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank
-
Sun Z, Jiang B. 1996. Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank. J Protein Chem 15:675-690.
-
(1996)
J Protein Chem
, vol.15
, pp. 675-690
-
-
Sun, Z.1
Jiang, B.2
-
42
-
-
0029027777
-
NMR study of the reconstitution of the β-sheet of thioredoxin by fragment complementation
-
Tasayco ML, Chao K. 1995. NMR study of the reconstitution of the β-sheet of thioredoxin by fragment complementation. Proteins 22:41-44.
-
(1995)
Proteins
, vol.22
, pp. 41-44
-
-
Tasayco, M.L.1
Chao, K.2
-
43
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
Tsai CJ, Kumar S, Ma B, Nussinov R. 1999. Folding funnels, binding funnels, and protein function. Protein Sci 8:1181-1190.
-
(1999)
Protein Sci
, vol.8
, pp. 1181-1190
-
-
Tsai, C.J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
44
-
-
0030602896
-
A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique
-
Tsai CJ, Lin SL, Wolfson HJ, Nussinov R. 1996. A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. J Mol Biol 260:604-620.
-
(1996)
J Mol Biol
, vol.260
, pp. 604-620
-
-
Tsai, C.J.1
Lin, S.L.2
Wolfson, H.J.3
Nussinov, R.4
-
45
-
-
1842405464
-
Studies of protein-protein interfaces: A statistical analysis of the hydrophobic effect
-
Tsai CJ, Lin SL, Wolfson HJ, Nussinov R. 1997. Studies of protein-protein interfaces: A statistical analysis of the hydrophobic effect. Protein Sci 6: 53-64.
-
(1997)
Protein Sci
, vol.6
, pp. 53-64
-
-
Tsai, C.J.1
Lin, S.L.2
Wolfson, H.J.3
Nussinov, R.4
-
46
-
-
0031012563
-
Hydrophobic folding units derived from dissimilar monomer structures and their interactions
-
Tsai CJ, Nussinov R. 1997. Hydrophobic folding units derived from dissimilar monomer structures and their interactions. Protein Sci 6:24-42.
-
(1997)
Protein Sci
, vol.6
, pp. 24-42
-
-
Tsai, C.J.1
Nussinov, R.2
-
48
-
-
0028932770
-
The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics
-
Viguera AR, Blanco FJ, Serrano L. 1995. The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics. J Mol Biol 247:670-681.
-
(1995)
J Mol Biol
, vol.247
, pp. 670-681
-
-
Viguera, A.R.1
Blanco, F.J.2
Serrano, L.3
-
49
-
-
0027165688
-
Peptide models of protein folding initiation sites. 1. Secondary structure formation by peptides corresponding to the G-and H-helices of myoglobin
-
Waltho JP, Feher VA, Merutka G, Dyson HJ, Wright PE. 1993. Peptide models of protein folding initiation sites. 1. Secondary structure formation by peptides corresponding to the G-and H-helices of myoglobin. Biochemistry 32:6337-6347.
-
(1993)
Biochemistry
, vol.32
, pp. 6337-6347
-
-
Waltho, J.P.1
Feher, V.A.2
Merutka, G.3
Dyson, H.J.4
Wright, P.E.5
-
50
-
-
0029786948
-
A dynamic bundle of four adjacent hydrophobic segments in the denatured state of staphylococcal nuclease
-
Wang Y, Shortle D. 1996. A dynamic bundle of four adjacent hydrophobic segments in the denatured state of staphylococcal nuclease. Protein Sci 5:1898-1906.
-
(1996)
Protein Sci
, vol.5
, pp. 1898-1906
-
-
Wang, Y.1
Shortle, D.2
-
52
-
-
0028212643
-
Autonomous subdomains in protein folding
-
Wu LC, Grandori R, Carey J. 1994. Autonomous subdomains in protein folding. Protein Sci 3:359-371.
-
(1994)
Protein Sci
, vol.3
, pp. 359-371
-
-
Wu, L.C.1
Grandori, R.2
Carey, J.3
-
53
-
-
0031450506
-
Hydrogen bonds and salt bridges across protein-protein interfaces
-
Xu D, Tsai CJ, Nussinov R. 1997. Hydrogen bonds and salt bridges across protein-protein interfaces. Protein Eng 10:999-1012.
-
(1997)
Protein Eng
, vol.10
, pp. 999-1012
-
-
Xu, D.1
Tsai, C.J.2
Nussinov, R.3
-
54
-
-
0027199670
-
Protein secondary structure prediction using nearest-neighbor methods
-
Yi TM, Lander ES. 1993. Protein secondary structure prediction using nearest-neighbor methods. J Mol Biol 232:1117-1129.
-
(1993)
J Mol Biol
, vol.232
, pp. 1117-1129
-
-
Yi, T.M.1
Lander, E.S.2
-
55
-
-
0027297660
-
Improved calculations of compactness and a reevaluation of continuous compact units
-
Zehfus MH. 1993. Improved calculations of compactness and a reevaluation of continuous compact units. Proteins 16:293-300.
-
(1993)
Proteins
, vol.16
, pp. 293-300
-
-
Zehfus, M.H.1
-
56
-
-
0023055758
-
Compact units in proteins
-
Zehfus MH, Rose GD. 1986. Compact units in proteins. Biochemistry 25:5759-5765.
-
(1986)
Biochemistry
, vol.25
, pp. 5759-5765
-
-
Zehfus, M.H.1
Rose, G.D.2
-
57
-
-
0029926618
-
In vitro evolution of thermodynamically stable turns
-
Zhou HX, Hoess RH, DeGrado WF. 1996. In vitro evolution of thermodynamically stable turns. Nat Struct Biol 3:446-451.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 446-451
-
-
Zhou, H.X.1
Hoess, R.H.2
Degrado, W.F.3
|