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Volumn 67, Issue 4, 2001, Pages 1565-1574

Bacterial Diversity and Community Structure in an Aerated Lagoon Revealed by Ribosomal Intergenic Spacer Analyses and 16S Ribosomal DNA Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; OXYGEN; RIBOSOMAL SPACER DNA; RNA 16S;

EID: 0035318585     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.4.1565-1574.2001     Document Type: Article
Times cited : (99)

References (49)
  • 1
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
    • Acinas, S. G., J. Antón, and F. Rodríguez-Valera. 1999. Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA. Appl. Environ. Microbiol. 65:514-522.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 514-522
    • Acinas, S.G.1    Antón, J.2    Rodríguez-Valera, F.3
  • 2
    • 0003425384 scopus 로고
    • American Public Health Association, Washington, D.C.
    • American Water Works Association, Water Pollution Control Federation, and American Public Health Association. 1995. Standard methods for the examination of water and wastewater, 19th ed. American Public Health Association, Washington, D.C.
    • (1995) Standard Methods for the Examination of Water and Wastewater, 19th Ed.
  • 3
    • 0002351436 scopus 로고
    • Use of microbial diversity measurement to assess environmental stress
    • M. J. Klug and C. A. Reddy (ed.), American Society for Microbiology, Washington, D.C.
    • Atlas, R. M. 1984. Use of microbial diversity measurement to assess environmental stress, p. 540-545. In M. J. Klug and C. A. Reddy (ed.), Current perspectives in microbial ecology. American Society for Microbiology, Washington, D.C.
    • (1984) Current Perspectives in Microbial Ecology , pp. 540-545
    • Atlas, R.M.1
  • 4
    • 51249174563 scopus 로고
    • Response of microbial populations to environmental disturbance
    • Atlas, R. M., A. Horowitz, M. Krichevsky, and A. K. Bej. 1991. Response of microbial populations to environmental disturbance. Microb. Ecol. 22:249-256.
    • (1991) Microb. Ecol. , vol.22 , pp. 249-256
    • Atlas, R.M.1    Horowitz, A.2    Krichevsky, M.3    Bej, A.K.4
  • 5
    • 0000438130 scopus 로고
    • Microbial communities and ecosystems
    • R. M. Atlas and R. Bartha (ed.), The Benjamin/Cummings Publishing Company, Redwood, Calif.
    • Atlas, R. M., and R. Bartha. 1993. Microbial communities and ecosystems, p. 142. In R. M. Atlas and R. Bartha (ed.), Microbial ecology: fundamentals and applications. The Benjamin/Cummings Publishing Company, Redwood, Calif.
    • (1993) Microbial Ecology: Fundamentals and Applications , pp. 142
    • Atlas, R.M.1    Bartha, R.2
  • 7
    • 0032966128 scopus 로고    scopus 로고
    • Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular (16S rDNA) methods
    • Blanc, M., L. Marilley, T. Beffa, and M. Aragno. 1999. Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular (16S rDNA) methods. FEMS Microbiol. Ecol. 28:141-149.
    • (1999) FEMS Microbiol. Ecol. , vol.28 , pp. 141-149
    • Blanc, M.1    Marilley, L.2    Beffa, T.3    Aragno, M.4
  • 8
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J., and E. W. Triplett. 1997. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63:2647-2653.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 9
    • 0026630452 scopus 로고
    • Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria
    • Bratina, B. J., G. A. Brusseau, and R. S. Hanson. 1992. Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria. Int. J. Syst. Bacteriol. 42:645-648.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 645-648
    • Bratina, B.J.1    Brusseau, G.A.2    Hanson, R.S.3
  • 10
    • 0005783199 scopus 로고
    • Klebsiella and nitrogen fixation in pulp and paper mill effluents and treatment systems
    • Bruce, M. E., and T. A. Clark. 1994. Klebsiella and nitrogen fixation in pulp and paper mill effluents and treatment systems. Appita J. 47:231-237.
    • (1994) Appita J. , vol.47 , pp. 231-237
    • Bruce, M.E.1    Clark, T.A.2
  • 11
    • 0031193552 scopus 로고    scopus 로고
    • Nitrogen fixation in an aerated stabilization basin treating bleached kraft mill wastewater
    • Clark, T. A., P. H. Dare, and M. E. Bruce. 1997. Nitrogen fixation in an aerated stabilization basin treating bleached kraft mill wastewater. Water Environ. Res. 69:1039-1046.
    • (1997) Water Environ. Res. , vol.69 , pp. 1039-1046
    • Clark, T.A.1    Dare, P.H.2    Bruce, M.E.3
  • 13
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package (version 3.2)
    • Felsenstein, J. 1989. PHYLIP - phylogeny inference package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 14
    • 0032879764 scopus 로고    scopus 로고
    • Automated approaches for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher, M. M., and E. W. Triplett. 1999. Automated approaches for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiol. 65:4630-4636.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 16
    • 0034466652 scopus 로고    scopus 로고
    • Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems
    • Gauthier F., J. D. Neufeld, B. T. Driscoll, and F. S. Archibald. 2000. Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems. Appl. Environ. Microbiol. 66:5155-5160.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5155-5160
    • Gauthier, F.1    Neufeld, J.D.2    Driscoll, B.T.3    Archibald, F.S.4
  • 17
    • 0027787605 scopus 로고
    • Typing of Clostridium difficile strains by PCR-amplification of variable length 16S-23S rDNA spacer regions
    • Gürtler, V. 1993. Typing of Clostridium difficile strains by PCR-amplification of variable length 16S-23S rDNA spacer regions. J. Gen. Microbiol. 139: 3089-3097.
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 3089-3097
    • Gürtler, V.1
  • 18
    • 0029057279 scopus 로고
    • Typing of Staphylococcus aureus strains by PCR-amplification of variable-length 16S-23S rDNA spacer regions: Characterization of spacer sequences
    • Gürtler, V., and H. D. Barrie. 1995. Typing of Staphylococcus aureus strains by PCR-amplification of variable-length 16S-23S rDNA spacer regions: characterization of spacer sequences. Microbiology 141:1255-1265.
    • (1995) Microbiology , vol.141 , pp. 1255-1265
    • Gürtler, V.1    Barrie, H.D.2
  • 19
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to lyping and identification of bacteria using the 16S-23S rDNA spacer region
    • Gürtler, V., and V. A. Stanisich. 1996. New approaches to lyping and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142:3-16.
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gürtler, V.1    Stanisich, V.A.2
  • 20
    • 0023426317 scopus 로고
    • An unusual rRNA operon constellation: In Thermus thermophilus HB8 the 23S/5S rRNA operon is a separate entity from the 16S rRNA operon
    • Hartmann, R. K. N. Ulbrich, and V. A. Erdmann. 1987. An unusual rRNA operon constellation: in Thermus thermophilus HB8 the 23S/5S rRNA operon is a separate entity from the 16S rRNA operon. Biochimie 69:1097-1104.
    • (1987) Biochimie , vol.69 , pp. 1097-1104
    • Hartmann1    Ulbrich, R.K.N.2    Erdmann, V.A.3
  • 21
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture- Independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture- independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:4765-1774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-11774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 22
    • 0000752502 scopus 로고
    • The nonconcept of species diversity: A critique and alternative parameters
    • Hurlbert, S. H. 1971. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52:577-586.
    • (1971) Ecology , vol.52 , pp. 577-586
    • Hurlbert, S.H.1
  • 23
    • 0027461618 scopus 로고
    • Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
    • Jensen, M. A., J. A. Webster, and N. Straus. 1993. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl. Environ. Microbiol. 59:945-952.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 945-952
    • Jensen, M.A.1    Webster, J.A.2    Straus, N.3
  • 24
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (ed.), Academic Press, Inc., New York, N.Y.
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21. In H. N. Munro (ed.), Mammalian protein metabolisms. Academic Press, Inc., New York, N.Y.
    • (1969) Mammalian Protein Metabolisms , pp. 21
    • Jukes, T.H.1    Cantor, C.R.2
  • 26
    • 0033831538 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater
    • LaPara, T. M., C. H. Nakutsu, L. Pantea, and J. E. Alleman. 2000. Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl. Environ. Microbiol. 66:3951-3959.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3951-3959
    • LaPara, T.M.1    Nakutsu, C.H.2    Pantea, L.3    Alleman, J.E.4
  • 27
    • 0024728302 scopus 로고
    • Evidence for unlinked rrn operons in the planctomycete Pirellula marina
    • Liesack, W., and E. Stackebrandt. 1989. Evidence for unlinked rrn operons in the planctomycete Pirellula marina. J. Bacteriol. 171:5025-5030.
    • (1989) J. Bacteriol. , vol.171 , pp. 5025-5030
    • Liesack, W.1    Stackebrandt, E.2
  • 28
    • 0031689399 scopus 로고    scopus 로고
    • Bacterioplankton community composition in a boreal forest lake
    • Lindström, E. S. 1998. Bacterioplankton community composition in a boreal forest lake. FEMS Microb. Ecol. 27:163-174.
    • (1998) FEMS Microb. Ecol. , vol.27 , pp. 163-174
    • Lindström, E.S.1
  • 30
    • 0017536326 scopus 로고
    • Detoxification of bleached kraft mill effluents - A manageable problem
    • Mueller, J. C., J. M. Leach, and C. C. Walden. 1977. Detoxification of bleached kraft mill effluents - a manageable problem. TAPPI J. 60:135-137.
    • (1977) TAPPI J. , vol.60 , pp. 135-137
    • Mueller, J.C.1    Leach, J.M.2    Walden, C.C.3
  • 31
    • 0030036446 scopus 로고    scopus 로고
    • Phylogenetic composition of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Murray, A. E., J. T. Hollibaugh, and C. Orrego. 1996. Phylogenetic composition of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl. Environ. Microbiol. 62:2676-2680.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2676-2680
    • Murray, A.E.1    Hollibaugh, J.T.2    Orrego, C.3
  • 32
    • 0031814110 scopus 로고    scopus 로고
    • Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica
    • Murray, A. E., C. M. Preston, R. Massana, L. T. Taylor, A. Blakis, K. Wu, and E. F. DeLong. 1998. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl. Environ. Microbiol. 64:2585-2595.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2585-2595
    • Murray, A.E.1    Preston, C.M.2    Massana, R.3    Taylor, L.T.4    Blakis, A.5    Wu, K.6    DeLong, E.F.7
  • 34
    • 0002151285 scopus 로고    scopus 로고
    • ITS analysis of prokaryotes
    • A. D. L. Akkermans, J. D. Van Elsas, and F. J. De Bruijn (ed.), Kluwer Academic Publishers, Boston, Mass.
    • Normand, P., C. Ponsonnet, X. Nesme, M. Neyra, and P. Simonet. 1996. ITS analysis of prokaryotes, p. 1-12. In A. D. L. Akkermans, J. D. Van Elsas, and F. J. De Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Boston, Mass.
    • (1996) Molecular Microbial Ecology Manual , pp. 1-12
    • Normand, P.1    Ponsonnet, C.2    Nesme, X.3    Neyra, M.4    Simonet, P.5
  • 35
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys, T., L. K. Nakamura, and F. M. Cohan. 1997. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47:1145-1156.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 36
    • 0034105806 scopus 로고    scopus 로고
    • Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-submunit rRNA genes
    • Peters, S., S. Koschinsky, F. Schwieger, and C. Tebbe. 2000. Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-submunit rRNA genes. Appl. Environ. Microbiol. 66:930-936.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 930-936
    • Peters, S.1    Koschinsky, S.2    Schwieger, F.3    Tebbe, C.4
  • 37
    • 0031769241 scopus 로고    scopus 로고
    • Effects of bacterial antibiotic production on rhizosphere microbial communities from a culture-independent perspective
    • Robleto, E. A., J. Borneman, and E. W. Triplett. 1998. Effects of bacterial antibiotic production on rhizosphere microbial communities from a culture-independent perspective. Appl. Environ. Microbiol. 64:5020-5022.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 5020-5022
    • Robleto, E.A.1    Borneman, J.2    Triplett, E.W.3
  • 38
    • 0028941296 scopus 로고
    • Characterization of a putative 23S-5S rRNA operon of Buchnera aphidicola (endosymbiont of aphids) unlinked to the 16S rRNA-encoding gene
    • Rouhbakhsh, D., and P. Baumann. 1995. Characterization of a putative 23S-5S rRNA operon of Buchnera aphidicola (endosymbiont of aphids) unlinked to the 16S rRNA-encoding gene Gene 155:107-112.
    • (1995) Gene , vol.155 , pp. 107-112
    • Rouhbakhsh, D.1    Baumann, P.2
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 0031719182 scopus 로고    scopus 로고
    • Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rDNA gene analysis
    • Sekiguchi, Y., Y. Kamagata, K. Syutsubo, A. Ohashi, H. Harada, and K. Nakamura. 1998. Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rDNA gene analysis. Microbiology 44: 2655-2665.
    • (1998) Microbiology , vol.44 , pp. 2655-2665
    • Sekiguchi, Y.1    Kamagata, Y.2    Syutsubo, K.3    Ohashi, A.4    Harada, H.5    Nakamura, K.6
  • 41
    • 0032825173 scopus 로고    scopus 로고
    • Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece)
    • Sievert, S. M., T. Brinkhoff, G. Muyzer, W. Ziebis, and J. Kuever. 1999. Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl. Environ. Microbiol. 65:3834-3842.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3834-3842
    • Sievert, S.M.1    Brinkhoff, T.2    Muyzer, G.3    Ziebis, W.4    Kuever, J.5
  • 42
    • 0010446496 scopus 로고
    • Use of rarefaction and related methods in ecology
    • K. L. Dickson, J. J. Cairns, and R. J. Livingston (ed.), American Society for Testing and Materials, Philadelphia, Pa.
    • Simberloff, D. 1978. Use of rarefaction and related methods in ecology, p. 150-165. In K. L. Dickson, J. J. Cairns, and R. J. Livingston (ed.), Biological data in water pollution assessment: quantitative and statistical analyses. American Society for Testing and Materials, Philadelphia, Pa.
    • (1978) Biological Data in Water Pollution Assessment: Quantitative and Statistical Analyses , pp. 150-165
    • Simberloff, D.1
  • 43
    • 0032901542 scopus 로고    scopus 로고
    • PCR targeted to the 16S-23S rRNA gene intergenic spacer region of Clostridium difficile and construction of a library consisting of 116 different PCR ribotypes
    • Stubbs, S. L. J., J. S. Brazier, G. L. O'Neill, and B. I. Duerden. 1999. PCR targeted to the 16S-23S rRNA gene intergenic spacer region of Clostridium difficile and construction of a library consisting of 116 different PCR ribotypes. J. Clin. Microbiol. 37:461-463.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 461-463
    • Stubbs, S.L.J.1    Brazier, J.S.2    O'Neill, G.L.3    Duerden, B.I.4
  • 45
    • 0033452330 scopus 로고    scopus 로고
    • Limitations for biological removal of resin acids from pulp mill effluent
    • Werker, A. G., and E. R. Hall. 1999. Limitations for biological removal of resin acids from pulp mill effluent. Water Sci. Technol. 40(11-12):281-288.
    • (1999) Water Sci. Technol. , vol.40 , Issue.11-12 , pp. 281-288
    • Werker, A.G.1    Hall, E.R.2
  • 46
    • 0033987792 scopus 로고    scopus 로고
    • Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
    • Yang, C.-H., and D. E. Crowley. 2000. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbiol. 66:345-351.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 345-351
    • Yang, C.-H.1    Crowley, D.E.2
  • 47
    • 0032875725 scopus 로고    scopus 로고
    • Occurrence of two resin acid-degrading bacteria and a gene encoding resin acid biodegradation in pulp and paper mill effluent biotreatment systems assayed by PCR
    • Yu, Z., V. J. Martin, and W. W. Mohn. 1999. Occurrence of two resin acid-degrading bacteria and a gene encoding resin acid biodegradation in pulp and paper mill effluent biotreatment systems assayed by PCR. Microb. Ecol. 38:114-125.
    • (1999) Microb. Ecol. , vol.38 , pp. 114-125
    • Yu, Z.1    Martin, V.J.2    Mohn, W.W.3
  • 48
    • 0032869809 scopus 로고    scopus 로고
    • Killing two birds with one stone: Simultaneous DNA and RNA extraction from activated sludge biomass
    • Yu, Z., and W. W. Mohn. 1999. Killing two birds with one stone: simultaneous DNA and RNA extraction from activated sludge biomass. Can. J. Microbiol. 45:269-272.
    • (1999) Can. J. Microbiol. , vol.45 , pp. 269-272
    • Yu, Z.1    Mohn, W.W.2
  • 49
    • 0033306742 scopus 로고    scopus 로고
    • Isolation and characterization of thermophilic bacteria capable of degrading dehydroabietic acid
    • Yu, Z., and W. W. Mohn. 1999. Isolation and characterization of thermophilic bacteria capable of degrading dehydroabietic acid. Can. J. Microbiol. 45:513-520.
    • (1999) Can. J. Microbiol. , vol.45 , pp. 513-520
    • Yu, Z.1    Mohn, W.W.2


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