Ionic distribution around simple B-DNA models. III. The effect of ionic charge

Journal of Chemical Physics

Volumn 114, Issue 9, 2001, Pages 4277-4284

  Abascal, José L F ^a   Gil Montoro, Juan Carlos ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; FREE ENERGY; IONIC STRENGTH; MONTE CARLO METHODS; POLYELECTROLYTES; POSITIVE IONS;

IONIC ATMOSPHERE; IONIC CHARGE;

DNA;

EID: 0035281037     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1342035     Document Type: Article

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48. J. C. Gil Montoro and J. L. F. Abascal, J. Chem. Phys. 106, 8239 (1997).
49. J. L. F. Abascal and J. C. Gil Montoro, J. Chem. Phys. 110, 11094 (1999).
50. M. A. Young, B. Jayaram, and D. L. Beveridge, J. Am. Chem. Soc. 119, 59 (1997).
51. A. P. Lyubartsev and A. Laaksonen, J. Biomol. Struct. Dyn. 16, 579 (1998).
52. V. A. Bloomfield, Biopolymers 31, 1471 (1991).
53. R. Podgornik, D. Rau, and V. Parsegian, Biophys. J. 66, 962 (1994).
54. L. Guldbrand, L. G. Nilsson, and L. Nordenskiöld, J. Chem. Phys. 85, 6686 (1986).
55. A. P. Lyubartsev and L. Nordenskiöld, J. Phys. Chem. 99, 10373 (1995).
56. J. X. Tang, S. Wong, P. T. Tran, and P. A. Janmey, Ber. Bunsenges. Phys. Chem. 100, 796 (1996).
57. N. Grønbech-Jensen, R. J. Mashl, R. F. Bruinsma, and W. M. Gelbart, Phys. Rev. Lett. 82, 101 (1999).
58. M. J. Stevens, Phys. Rev. Lett. 82, 101 (1999).
59. P. Sottas, E. Larquet, A. Stasiak, and J. Dubochet, Biophys. J. 77, 1858 (1999).
60. D. Dolar and A. Peterlin, J. Chem. Phys. 50, 3011 (1969).
61. G. S. Manning, Q. Rev. Biophys. 11, 179 (1978).
62. M. Le Bret and B. H. Zimm, Biopolymers 23, 271 (1984).
63. P. N. Vorontsov-Velyaminov and A. P. Lyubartsev, J. Biomol. Struct. Dyn. 7, 739 (1989).
64. R. J. Bacquet and P. J. Rossky, J. Phys. Chem. 92, 3604 (1988).
65. C. W. Outhwaite, J. Chem. Soc., Faraday Trans. 2 82, 789 (1986).
66. T. Das, D. Bratko, L. B. Bhuiyan, and C. W. Outhwaite, J. Phys. Chem. 99, 410 (1995).
67. T. Das, D. Bratko, L. B. Bhuiyan, and C. W. Outhwaite, J. Chem. Phys. 107, 9197 (1997).
68. S. Gavryushov and P. Zielenkiewicz, J. Phys. Chem. B 101, 10903 (1997).
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71. S. Arnott and D. W. L. Hukins, Biochem. Biophys. Res. Commun. 47, 1504 (1972).
72. J. C. Gil Montoro and J. L. F. Abascal, Mol. Phys. 89, 1081 (1996).
73. R. M. Fuoss, A. Katchalsky, and S. Lifson, Proc. Natl. Acad. Sci. U.S.A. 37, 579 (1951).
74. J. C. Gil Montoro and J. L. F. Abascal, Mol. Simul. 14, 313 (1995).
75. J. C. Gil Montoro and J. L. F. Abascal, Mol. Simul. 21, 249 (1999).
76. C. L. Brooks, B. M. Pettitt, and M. Karplus, J. Chem. Phys. 83, 5897 (1985).
77. H. L. Gordon and S. Goldman, Mol. Simul. 3, 213 (1989).
78. J. L. F. Abascal and P. Turq, Chem. Phys. 153, 79 (1991).
79. J. L. F. Abascal, F. Bresme, and P. Turq, Mol. Phys. 81, 143 (1994).
80. N. Korolev, A. P. Lyubartsev, A. Rupprecht, and L. Nordenskiöld, J. Phys. Chem. B 103, 9008 (1999).
81. C. S. Murthy, R. J. Bacquet, and P. J. Rossky, J. Phys. Chem. 89, 701 (1985).
82. P. N. Vorontsov-Velyaminov and A. P. Lyubartsev, Mol. Simul. 9, 285 (1992).
83. J. L. F. Abascal and J. C. Gil Montoro, J. Phys.: Condens. Matter 12, A327 (2000).
84. J. L. F. Abascal and J. C. Gil Montoro, to be published.
85. J. Skolnick and M. Fixman, Macromolecules 11, 867 (1978).
86. S. Gavryushov and P. Zielenkiewicz, J. Phys. Chem. B 103, 5860 (1999).
87. M. Olvera de la Cruz et al., J. Chem. Phys. 103, 5781 (1995).
88. B.-Y. Ha and A. J. Liu, Phys. Rev. Lett. 79, 1289 (1997).