Automated construction of high-density comparative maps between rat, human, and mouse

Genome Research

Volumn 11, Issue 11, 2001, Pages 1935-1943

  Kwitek, Anne E ^a   Tonellato, Peter J ^a   Chen, Dan ^a   Gullings Handley, Jo ^a   Cheng, Yongjian Samuel ^a   Twigger, Simon ^a   Scheetz, Todd E ^b,c   Casavant, Thomas L ^d   Stoll, Monika ^a   Nobrega, Marcelo A ^a   Shiozawa, Masahide ^a   Soares, M Bento ^c   Sheffield, Val C ^b,c   Jacob, Howard J ^a  

^a MEDICAL COLLEGE OF WISCONSIN   (United States)

^b UNIVERSITY OF IOWA   (United States)

^c UNIVERSITY OF IOWA   (United States)

^d NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; COMPARATIVE STUDY; COMPUTER SYSTEM; CONTROLLED STUDY; DATA BASE; EXPRESSED SEQUENCE TAG; GENE MAPPING; GENETIC CONSERVATION; GENETIC ORGANIZATION; HUMAN; MANUAL LABOR; MOUSE; NONHUMAN; ONLINE SYSTEM; PHENOTYPE; PHYSIOLOGY; PRIORITY JOURNAL; RAT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

ANIMALIA; MAMMALIA; RODENTIA;

EID: 0035184932     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.173701     Document Type: Article

References (40)

1. The genome sequence of Drosophila melanogaster
2. A fast and scalable radiation hybrid construction and integration strategy
3. Comparative genome organization of vertebrates: The first international workshop on comparative genome organization
4. The Mouse Genome Database (MGD): Expanding genetic and genomic resources for the laboratory mouse
5. Zooming in on the human-mouse comparative map: Genome conservation re-examined on a high-resolution scale
6. Variations of linkage in rats and mice
7. Comparative genomics: The key to understanding the Human Genome Project
8. Human/mouse homology relationships
9. A physical map of 30,000 human genes
10. Animal models of inborn errors of metabolism
11. Homology: A personal view on some of the problems
12. Comparative mapping of mouse and rat chromosomes by fluorescence in situ hybridization
13. A radiation hybrid map of the human genome
14. The comparative genetics of color in rodents and carnivora
15. Initial sequencing and analysis of the human genome
16. The gene map of the norway rat (Rattus norvegicus) and comparative mapping with mouse and man
17. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes
18. Evolutionary parameters of the transcribed mammalian genome: An analysis of 2,820 orthologous rodent and human sequences
19. Public-private project to deliver mouse genome in 6 months
20. Maps of linkage and synteny homologies between mouse and man
21. Lengths of chromosomal segments conserved since divergence of man and mouse
22. Conserved regions of homologous G-banded chromosomes between orders in mammalian evolution: Carnivores and primates
23. Construction of a physical map on mouse and human chromosome 1: Comparison of 13 Mb of mouse and 11 Mb of human DNA
24. The promise of comparative genomics in mammals
25. Finally, the book of life and instructions for navigating it
26. Rat genome off to an early start
27. When authorship fails: A proposal to make contributors accountable
28. High resolution of mouse chromosomes: Banding conservation between man and mouse
29. Comparative genome mapping: Mouse and rat homologies revealed by fluorescence in situ hybridization
30. Comparative chromosome painting discloses homologous segments in distantly related mammals
31. Ther human serum amyloid A protein (SAA) superfamily gene cluster: Mapping to chromosome 11p15.1 by physical and genetic linkage analysis
32. Generation of a high-density rat EST map
33. A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat
34. New target regions for human hypertension via comparative genomics
35. Clustering of six human 11p15 gene homologs within a 500 kb interval of proximal mouse chromosome 7
36. Comparative genome mapping in the sequence-based era: Early experience with human chromosome 7
37. Radiation hybrid map of the mouse genome
38. A radiation hybrid map of the rat genome containing 5,255 markers
39. Chromosome painting in mammals as an approach to comparative genomics
40. A greedy algorithm for aligning DNA sequences