Prediction of membrane proteins based on classification of transmembrane segments

Protein Engineering

Volumn 11, Issue 11, 1998, Pages 961-970

  Kihara, Daisuke ^a   Shimizu, Toshio ^b   Kanehisa, Minoru ^a  

^a KYOTO UNIVERSITY   (Japan)

^b HIROSAKI UNIVERSITY   (Japan)

Author keywords

Compatibility score; Discriminant analysis; Mahalanobis distance; Membrane protein class; Protein structure prediction

Indexed keywords

GLOBULAR PROTEIN; MEMBRANE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; DISCRIMINANT ANALYSIS; HYDROPHOBICITY; PREDICTION; PRIORITY JOURNAL;

EID: 0031793227     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/11.11.961     Document Type: Article

References (37)

1. Bairoch, A. and Apweiler, R. (1997) Nucleic Acids Res., 25, 31-36.
2. Bono, H., Ogata, H., Goto, S. and Kanehisa, M. (1998) Genome Res., 8, 203-210.
3. Claros, M.G. and von Heijne, G. (1994) Comp. Appl. Biosci., 10, 685-686.
4. Clayton, R.A., White, O., Ketchum, A. and Venter, J.C. (1997) Science, 387, 459-462.
5. Degli Esposti, M., Ghelli, A., Luchetti, R., Crimi, M. and Lenaz, G. (1989) Ital. J. Biochem., 38, 1-22.
6. Deisenhofer, J., Epp, O., Miki, K., Huber, R. and Michel, H. (1985) Nature, 318, 618-624.
7. Donnelly, D., Overington, J.P., Ruffle, S.V., Nugent, J.H.A. and Blundell, T.L. (1993) Protein Sci., 2, 55-70.
8. Eisenberg, D., Schwartz, E., Komaromy, M. and Wall, R. (1984) J. Mol. Biol., 179, 125-142.
9. Görne-Tschelnokow, U., Strecker, A., Kaduk, C., Naumann, D. and Hucho, F. (1994) EMBO J., 13, 338-341.
10. Grantham, R. (1974) Science, 185, 862-864.
11. Henderson, R., Baldwin, J.M., Ceska, T.A., Zemlin, F., Beckmann, E. and Downing, K.H. (1990) J. Mol. Biol., 213, 899-929.
12. Hobohm, U., Scharf, M., Schneider, R. and Sander, C. (1992) Protein Sci., 1, 409-417.
13. Jones, D.T., Taylor, W.R. and Thornton, J.M. (1994) Biochemistry, 33, 3038-3049.
14. Kendall, M. and Stuart, A. (1976) The Advanced Theory of Statistics, Vol. 3. Hafner Press, New York.
15. Kihara, D. and Kanehisa, M. (1997) Genome Informatics 1997. Universal Academy Press, Tokyo, pp. 300-301.
16. Klein, P., Kanehisa, M. and DeLisi, C. (1985) Biochim. Biophys. Acta, 815, 468-476.
17. Kühlbrandt, W., Wang, D.N. and Fujiyoshi, Y. (1994) Nature, 367, 614-621.
18. Kyte, J. and Doolittle, R.F. (1982) J. Mol. Biol., 157, 105-132.
19. Langs, D.A. (1988) Science, 241, 188-191.
20. Lücke, H., Chang, B.T., Mailliard, W.S., Schlaepfer, D.D. and Haigler, H.T. (1995) Nature, 378, 512-515.
21. Matthews, B.W. (1975) Biochim. Biophys. Acta, 405, 442-451.
22. Mitaku, S., Suzuki, K., Odashima, S., Ikuta, K., Suwa, M., Kukita, F., Ishikawa, M and Itoh, H. (1995) Proteins Struct. Funct. Genet., 22, 350-362.
23. Nakai, K. and Kanehisa, M. (1992) Genomics, 14, 897-911.
24. Parker, M.W., Postma, J.P., Pattus, F., Tucker, A.D. and Tsernoglou, D. (1992) J. Mol. Biol., 224, 639-657.
25. Parker, M.W., Buckley, J.T., Postma, J.P., Tucker, A.D., Leonard, K., Pattus, F. and Tsernoglou, D. (1994) Nature, 367, 292-295.
26. Persson, B. and Argos, P. (1994) J. Mol. Biol., 237, 182-192.
27. Picot, D., Loll, P.J. and Garavito, R.M. (1994) Nature, 367, 243-249.
28. Rao, J.K.M. and Argos, P. (1986) Biochim. Biophys. Acta. 869, 197-214.
29. Rost, B., Casadio, R., Fariselli, P. and Sander, C. (1995) Protein Sci., 4, 521-533.
30. Rost, B., Fariselli, P. and Casadio, R. (1996) Protein Sci., 5, 1704-1718.
31. Schulz, G.E. and Shirmer, R.H. (1979) Principles of Protein Structure. Springer-Verlag.
32. Suwa, M., Hirokawa, T. and Mitaku, S. (1995) Proteins Struct. Funct. Genet., 22, 363-377.
33. Tatusov, R.L., Koonin, E.V. and Lipman, D.J. (1997) Science, 278, 631-637.
34. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. and Yoshikawa, S. (1996) Science, 272, 1136-1144.
35. Taylor, W.R., Jones, D.T. and Green, N.M. (1994) Proteins Struct. Funct. Genet., 18, 281-294.
36. von Heijne, G. (1992) J. Mol. Biol., 225, 487-494.
37. Weiss, M.S. and Schulz, G.E. (1992) J. Mol. Biol., 227, 493-509.