Chloroplast microsatellites and mitochondrial nad1 intron 2 sequences indicate congruent phylogenetic relationships among Swiss stone pine (Pinus cembra), Siberian stone pine (Pinus sibirica), and Siberian dwarf pine (Pinus pumila)

Molecular Ecology

Volumn 10, Issue 6, 2001, Pages 1489-1497

  Gugerli, F ^a   Senn, J ^a   Anzidei, M ^b   Madaghiele, A ^b   Buchler U ^a   Sperisen, C ^a   Vendramin, G G ^b  

^a SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

^b Istituto Miglioramento Genetico Piante Forestali   (Italy)

Author keywords

Chloroplast DNA simple sequence repeats; Haplotypic diversity; Mitochondrial DNA nad1 intron sequence; Phylogeography; Tandem repeats

Indexed keywords

CHLOROPLAST; GENE DELETION; GENE INSERTION; GENE SEQUENCING; GENETIC RELATIONSHIP; HAPLOTYPE; INTRASPECIFIC VARIATION; INTRON; MICROSATELLITE DNA; MITOCHONDRION; MOLECULAR ECOLOGY; MOLECULAR EVOLUTION; PHYLOGENY;

BASE SEQUENCE; CHLOROPLASTS; DNA, MITOCHONDRIAL; GENETICS, POPULATION; HAPLOTYPES; INTRONS; MICROSATELLITE REPEATS; MITOCHONDRIAL PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; SIBERIA; SWITZERLAND; TREES;

EID: 0034989011     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2001.01285.x     Document Type: Article

References (50)

1. Detection of haplotypic variation and natural hybridization in halepensis-complex pine species using chloroplast SSR markers
2. Hybridization and classification of the white pines (Pinus Section Strobus)
3. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants
4. Chloroplast microsatellites reveal population genetic diversity in red pine, Pinus resinosa Ait.
5. Population structure, gene diversity, and differentiation in natural populations of Cedar pines (Pinus subsection Cembrae, Pinaceae) in the USSR
6. Late Pleistocene vegetation history
7. Some genetic consequences of ice ages, and their role in divergence and speciation
8. Molecular evidence of natural hybridization between Abies veitchii and A. homolepis (Pinaceae) revealed by chloroplast, mitochondrial and nuclear DNA markers
9. Direct and indirect estimates of seed versus pollen movement within a population of ponderosa pine
10. A comparison of population differentiation across four classes of gene marker in limber pine (Pinus flexilis James)
11. Historical separation and present gene flow through a zone of secondary contact in Ponderosa pine
12. Phylogenetics of Pinus (Pinaceae) based on nuclear ribosomal DNA internal transcribed spacer region sequences
13. Contrasting the distribution of chloroplast DNA and allozyme polymorphism among local populations of Silene alba: Implications for studies of gene flow in plants
14. Glacial refugia of limber pine (Pinus flexilis James) inferred from the population structure of mitochondrial DNA
15. Primers designed to amplify a mitochondrial nad1 intron in ponderosa pine, Pinus ponderosa, limber pine, P. flexilis, and Scots pine, P. sylvestris
16. Analysis of hyper-variable chloroplast microsatellites in Pinus halepensis reveals a dramatic genetic bottleneck
17. Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in loblolly pine
18. Genetic distance between populations
19. Contrasting modes and tempos of genome evolution in land plant organelles
20. Mitochondrial DNA in plant systematics: Applications and limitations
21. Genetic evidence of natural hybridization between Siberian stone pine, Pinus sibirica Du Tour, and dwarf Siberian pine, P. pumila (Pall.) Regel
22. Polymorphism revealed by simple sequence repeats
23. Polymorphic simple sequence repeat regions in chloroplast genomes: Applications to the population genetics of pines
24. Gene pool variation in Caledonian and European Scots pine (Pinus sylvestris L.) revealed by chloroplast simple sequence repeats
25. A low mutation rate for chloroplast microsatellites
26. Multiple origins for Scots pine (Pinus sylvestris L.) in Scotland: Evidence from mitochondrial DNA variation
27. The postglacial history of Scots pine (Pinus sylvestris L.) in western Europe: Evidence from mitochondrial DNA variation
28. An example of microsatellite length variation in the mitochondrial genome of conifers
29. Tandem repeats in plant mitochondrial genomes: Application to the analysis of population differentiation in the conifer Norway spruce
30. Genetic variation of mitochondrial DNA reveals subdivision of Norway spruce (Picea abies (L.) Karst.)
31. Comparison of two rapid DNA extraction protocols for gymnosperms for application in population genetic and phylogenetic studies
32. Distribution of genetic diversity in Pinus pinaster Ait. as revealed by chloroplast microsatellites
33. Chloroplast microsatellites analysis reveals the presence of population subdivision in Norway spruce
34. High level of variation at Abies alba chloroplast microsatellite loci in Europe
35. A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae
36. Characterisation and inheritance of polymorphic plastid microsatellites in Abies
37. Paternal leakage of mitochondrial DNA in Pinus
38. Genetic evidence for the presence of cytoplasmic DNA in pollen and megagametophytes and maternal inheritance of mitochondrial DNA in Pinus
39. Phylogenetic relationships of Eurasian pines (Pinus, Pinaceae) based on chloroplast rbcL, matK, rpl20-rps18 spacer, and trnV intron sequences
40. Spatial distribution of cpDNA and mtDNA haplotypes in a hybrid zone between Pinus pumila and P. parviflora var. pentaphylla (Pinaceae)
41. A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms
42. Chloroplast microsatellites as markers for paternity analysis in Abies alba