HLA molecular markers in Tuvinians: A population with both Oriental and Caucasoid characteristics

Annals of Human Genetics

Volumn 65, Issue 3, 2001, Pages 245-261

  Martinez Laso, J ^b   Sartakova, M ^b   Allende, L ^b   Konenkov, V ^a   Moscoso, J ^c   Silvera Redondo, C ^c   Pacho, A ^c   Trapaga, J ^c   Gomez Oasado, E ^c   Arnaiz Villena, A ^b  

^a INSTITUTE OF CLINICAL IMMUNOLOGY   (Russian Federation)

^b HOSPITAL UNIVERSITARIO 12 DE OCTUBRE   (Spain)

^c

^d

Author keywords

[No Author keywords available]

Indexed keywords

LYMPHOCYTE ANTIGEN;

AMERICAN INDIAN; ARTICLE; ASIAN; CALCULATION; CAUCASIAN; CHROMOSOME; COMPARATIVE STUDY; CONTROLLED STUDY; ESKIMO; ETHNIC GROUP; GENETIC DISTANCE; HAPLOTYPE; HLA SYSTEM; HUMAN; MODEL; MONGOLIA; PACIFIC ISLANDS; POPULATION; PRIORITY JOURNAL; RUSSIAN FEDERATION; TURKEY (REPUBLIC);

ALLELES; ASIAN CONTINENTAL ANCESTRY GROUP; EMIGRATION AND IMMIGRATION; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENES, MHC CLASS I; GENES, MHC CLASS II; GENOTYPE; HAPLOTYPES; HLA ANTIGENS; HUMANS; MODELS, GENETIC; PHYLOGENY; RUSSIA; SEQUENCE ANALYSIS, DNA; TURKEY;

EID: 0034933613     PISSN: 00034800     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0003480001008624     Document Type: Article

References (71)

1. Alexeev, L. P. & Petranyi, G. (1992). HLA in ethnic groups from the former USSR. In HLA 1991 (ed. K. Tsuji, M. Aizawa & T. Sasazuki T), vol. 1, pp. 666-673. Oxford: Oxford University Press.
2. Arnaiz-Villena, A., Rodriguez de Cordoba, S., Vela, F., Pascual, J. C., Cervero, J. & Bootello, A. (1981). HLA antigens in a sample of the Spanish population: common features among Spaniards, Basques and Sardinians. Hum. Genet. 58, 344-348.
3. Arnaiz-Villena, A., Timon, M., Corell, A., Perez-Aciego, P., Martin-Villa, J. M. & Regueiro, J. R. (1992). Primary immunodeficiency caused by mutations in the gene encoding the CD3-gamma subunit of the T-lymphocyte receptor. N. Eng. J. Med. 327, 529-533.
4. Arnaiz-Villena, A., Benmamar, D., Alvarez, M., Diaz-Campos, N., Varela, P., Gomez-Casado, E. & Martinez-Laso, J. (1995). HLA allele and haplotype frequencies in Algerians. Relatedness in Spaniards and Basques. Hum. Immunol. 43, 259-208.
5. Arnaiz-Villena, A., Martinez-Laso, J., Gomez-Casado, E., Diaz-Campos, N., Santos, P., Martinho, A. & Breda-Coimbra, H. (1997). Relatedness among Basques, Portuguese, Spaniards, and Algerian studied by HLA allelic frequencies and haplotypes. Immunogenetics 47, 37-43.
6. Arnaiz-Villena, A., Iliakis, P., Gonzalez-Hevilla, M., Longas, J., Gomez-Casado, E., Sfyridaki, K., Trapaga, J., Silvera-Redondo, C, Matsouka, C. & Martinez-Laso, J. (1999). The origin of Cretan population as determined by characterization of HLA alleles. Tissue Antigens 53, 213-220.
7. Arnaiz-Villena, A., Vargas-Alarcon, G., Granados, J., Gomez-Casado, E., Longas, J., Gonzalez-Hevilla, M., Zuñiga, J., Salgado, N., Hernandez-Pacheco, G., Guillen, J. & Martinez-Laso, J. (2000). HLA in Mexican Mazatecans, the peopling of the Americas and the uniqueness of Amerindians. Tissue Antigens 56, 405-410.
8. Bannai, M., Tokunaga, K., Imanishi,.T., Harihara, S., Fujisawa, K., Juji, T. & Omoto, K. (1996). HLA class II alleles in Ainu living in Hidaka district, Hokkaido, Northern Japan. Am. J. Phys. Anthropol. 101, 1-9.
9. Bignon, J. D. & Fernandez-Vina, M. A. (1997). Protocols of the 12th International Histocompatibility Workshop for typing of HLA class II alleles by DNA amplification by the polymerase chain reaction (PCR) and hybridization with sequence specific oligonucleotide probes (SSOP). In Genetic diversity of HLA. Functional and Medical Implication (ed. D. Charron), vol 1, pp. 584-595. Paris: EDK.
10. Bodmer, J. G., Marsh, S. G. E., Albert, E. D., Bodmer, W. F., Bontrop, R. E., Dupont, B., Erlich, H. A., Hansen, J. A., Mach, B., Mayr, W. R., Parham, P., Petersdorf, E. W., Sasazuki, T., Schreuder, G. M., Strominger, J. L., Svejgaard, A. & Terasaki, P. I. (1999). Nomenclature for factors of the HLA System, 1998. Tissue Antigens 53, 407-440.
11. Bruges-Armas, J., Martinez-Laso, J., Martins, B., Allende, L., Gomez-Casado, E., Longas, J., Varela, P., Castro, M. J. & Arnaiz-Villena, A. (1999). HLA in the Azores Archipelago: possible presence of Mongoloid genes. Tissue Antigens 54, 349-359.
12. Cavalli-Sforza, L. L., Menozzi, P. & Piazza, A. (1994). The history and geography of human genes. Princeton, NJ : Princeton University Press.
13. Cerna, M., Falco, M., Friedman, H., Raimondi, E., Maccagno, A., Fernandez-Vina, M. & Stastny, P. (1993). Differences in HLA class II alleles of isolated South American Indian populations from Brazil and Argentina. Hum Immunol 37, 213-220.
14. Chimge, N. O., Tanaka, H., Kashiwase, K., Ayush, D., Tokunaga, K., Saji, H., Akaza, T., Batsuuri, J. & Juji, T. (1990). The HLA system in the population of Mongolia. Tissue antigens 49, 477-483.
15. Clayton, J. & Lonjou, C. (1997). Allele and haplotype frequencies for HLA loci in various ethnic groups. In Genetic diversity of HLA. Funcional and Medical Implication, (ed D. Charron), vol 1, pp 665-820. Paris: EDK.
16. Crawford, M. H. (1998). The origins of Native Americans: evidence from anthropological genetics. Cambridge: Cambridge University Press.
17. Danilovs, J., Terasaki, P. I., Park, M. S. & Ayoub, G. (1980). B lymphocyte isolation by thrombin-nylon wool. In Histocompatibility Testing 1980 (ed. P. I. Terasaki PI), p. 287. Los Angeles, CA: UCLA Tissue Typing Laboratory.
18. Dobbins, F. (1993). Disease transfer contact. Annu. Rev. Anthropol. 22, 273-291.
19. Encyclopaedia Britannica (1999). Sutton, Surney: Encyclopaedia Britannica International Ltd.
20. Excoffier, L. & Slatkin, M. (1995). Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 12, 921-927.
21. Fefelova, V. V. (1990). Participation of Indo-European tribes in ethnogeny of the mongoloid population of Siberia: analysis of the HLA antigen distribution in mongoloids of Siberia. Am. J. Hum. Genet. 47, 294-301.
22. Gao, X., Bhatia, K., Trent, R. J. & Serjeantson, S. W. (1992a). HLA-DR, DQ nucleotide sequence polymorphisms in five Melanesian populations. Tissue Antigens 40, 31-37.
23. Gao, X., Veale, A. & Serjeantson, S.W. (1992b). HLA class II diversity in Australian aborigines: unusual HLA-DRB1 alleles. Immunogenetics 36, 333-337.
24. Gao, X., Zimmet, P. & Serjeantson, S. W. (1992c). HLA-DR, DQ sequence polymorphisms in Polynesians, Micronesians and Javanese. Hum. Immunol. 34, 153-161.
25. Geng, L., Imanishi, T., Tokunaga, K., Zhu, D., Mizuki, N., Xu, S., Geng, Z., Gojobori, T., Tsuji, K. & Inoko, H. (1995). Determination of HLA class II alleles by genotyping in a Manchu population in the northern part of China and its relationship with Han and Japanese populations. Tissue Antigens 46, 111-116.
26. Golubenko, M. V., Puzyrev, V. P., Saliukov, V. B., Kucher, A. N. & Sanchat, N. O. (2000). Distribution of a deletion-insertion polymorphism in intergenic region V of mitochondrial DNA among the aboriginal population of Tuva. Genetika 36, 371-370.
27. Gonem, A. (1990). The Encyclopedia of the Peoples of the World. Pp. 143-145. Jesuralem: Jesuralem Publishing House Ltd.
28. Gomez-Casado, E., Martinez-Laso, J., Gonzalez-Hevilla, M., Longas, J., Rubio, I., Silvera-Redondo, C., Garcia-Gomez, A., Lowy, E. & Arnaiz-Villena A. (2000a). A novel HLA-A*6816 allele possibly generated by a point mutation in a Chilean from Punta Arenas (Magellan Strait). Immunogenetics 51, 257-200.
29. Gomez-Casado, E., Del Moral, P., Martinez-Laso, J., Garcia-Gomez, A., Allende, L., Silvera-Redond, C., Longas, J., Gonzalez-Hevilla, M., Kandil, M., Zamora, J. & Arnaiz-Villena, A. (2000b). HLA genes in Arabicspeaking Moroccans: close relatedness to Berbers and Iberians. Tissue Antigens 55, 239-249.
30. Grahovac, B., Sukernik, R. I., O'hUigin, C., Zaleska-Rutezynska, Z., Blagitko, N., Raldugina, O., Kosutic, T., Satta, Y., Figueroa, F., Takahata, N. & Klein, J. (1998). Polymorphism of the HLA class II loci in Siberian populations. Hum. Genet. 102, 27-13.
31. Greenberg, J. H., Turner, C. G., Zegura, S. L. (1980). The settlement of the Americas: a comparison of the linguistic, dental and genetic evidence. Curr Anthropol 27, 477-498.
32. Horai, S., Kondo, R., Nakagawa-Hattori, Y., Hayashi, S., Sonoda, S. & Tajima, K. (1993). Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol Biol Evol 10, 23-47.
33. Imanishi, T., Akaza, T., Kimura, A., Tokunaga, K. & Gojobori, T. (1992a). Allele and haplotype frequencies for HLA and complement loci in various ethnic groups. In HLA 1991 (ed. K. Tsuji, M. Aizawa & T. Sasazuki), vol 1, pp. 1005-1220. Oxford: Oxford University Press.
34. Imanishi, T., Akaza, T., Kimura, A., Tokunaga, K. & Gojobori, T. (19926). Estimation of allele and haplotype frequencies for HLA and complement loci. In HLA 1991 (ed. K. Tsuji, M. Aizawa & T. Sasazuki T), vol. 1, pp. 70-79. Oxford: Oxford University Press.
35. Izaabel, H., Garchon, H. J., Caillat-Zueman, S., Beaurain, G., Akhayat, O., Bach, J. F. & Sanchez-Mazas, A. (1998). HLA class II DNA polymorphism in a Moroccan population from the Souss, Agadir area. Tissue Antigens 51, 100-110.
36. Jaraquemada, D., Alonso, A., Awad, J., D'Amaro, J., Ollier, W., Doyle, P., Okoye, R. C., Williams, E., Festenstein, H., Lian, F., et al. (1984). HLA polymorphisms in a Shanghai Chinese population. Tissue Antigens 23, 23-32.
37. Karafet, T., Zegura, S. L., Vuturo-Brady, J., Posukh, O., Osipova, L., Wiebe, V., Romero, F., Long, J. C., Harihara, S., Jin, F., Dashnyam, B., Gerelsaikhan, T., Omoto, K. & Hammer, M. F. (1997). Y chromosome markers and trans-Bering Strait dispersals. Am. J. Phys. Anthropol. 102, 301-314.
38. Karafet, T. M., Zegura, S. L., Posukh, O., Osipova, L., Bergen, A., Long, J., Goldman, D., Klitz, W., Harihara, S., de Knijff, P., Wiebe, V., Griffiths, R. C., Templeton, A. R. and Hammer, M. F. (1999). Ancestral Asian source(s) of New World Y-chromosome founder haplotypes. Am. J. Hum. Genet. 64, 817-831.
39. Kimura, A. & Sasazuki, T. (1992). Eleventh International Histocompatibility Workshop reference protocol for the HLA-DNA typing technique. In HLA 1991 (ed. K. Tsuji, M. Aizawa & T. Sasazuki T), vol. 1, pp. 397-419. Oxford: Oxford University Press.
40. Kolman, C. J., Sambuughin, N. & Bermingham, E. (1996). Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142, 1321-1334.
41. Kucher, A. N., Puzyrev, V. P., Chernestov, D. B., Erdyniera, L. S. & Sanchat, N. O. (2000). Polymorphism of immunological and biochemical marker genes in rural populations of the Tuva Republic. Genetika 36, 562-069.
42. Lester, S., Cassidy, S., Humphreys, I., Bennett, G., Hurley, C. K. Boettcher, B. & McChiskey, J. (1995). Evolution in HLA-DRB1 and Major Histocompatibility Complex class II haplotypes of Australian aborigines. Definition of a new DRB1 allele and distribut ion of DRB1 gene frequencies. Hum.Immunol. 42, 154-160.
43. Martinez-Laso, J., De Juan, D., Martinez-Quiles, N., Gomez-Casado, E., Cuadrado, E. & Arnaiz-Villena, A. (1995). The contribution of the HLA-A, -B, -C and -DR, -DQ DNA typing to the study of the origins of Spaniards and Basques. Tissue Antigens 45, 237-245.
44. Martinez-Laso, J., Gazit, E., Gomez-Casado, E., Morales, P., Martinez-Quiles, N., Alvarez, M., Martin-Villa, J. M., Fernandez, V. & Arnaiz-Villena, A. (1990). HLA-DR and DQ polymorphism in Ashkenazi and non-Ashkenazi Jews: comparison with other Mediterraneans. Tissue Antigens 47, 63-71.
45. Mattiuz, P. L., Ihde, D., Piazza, A., Ceppelini, R. & Wodmer, W. F. (1970). New approaches to the population genetics and segregation analysis of the HLA system. In Histocompatibility Testing 1970. Pp. 193-206. Copenhagen: Munksgaard.
46. Merriwether, D. A., Rothhammer, F. & Ferrell, R. E. (1995). Distribution of the four founding lineage haplotypes in Native Americans suggests a single wave of migration for the New World. Am. J. Phys. Anthropol. 98, 411-430.
47. Merriwether, D. A., Hall, W. W., Vahlne, A. & Ferrell, R. E. (1996). mtDNA variation indicates Mongolia may have been the source for the founding population for the New World. Am J Hum Genet 59, 204-212.
48. Miniter, P., Chan, K. W., Pollack, M. S., Dupont, B. & O'Neill, G. J. (1981). HLA-linked genetic markers in Chinese and other Oriental populations. Tissue Antigens 18, 285-298.
49. Monsalve, M. V., Edin, G. & Devine, D. V. (1998). Analysis of HLA class I and class II in Na-Dene and Amerindian populations from British Columbia, Canada. Hum. Immunol. 59, 48-55.
50. Munkhbat, B., Sato, T., Hagihara, M., Sato, K., Kimura, A., Munkhtuvshin, N. & Tsuji, K. (1997). Molecular analysis of HLA polymorphism in Khoton-Mongolians. Tissue antigens 50, 124-134.
51. Neel, J. V., Biggar, R.J. & Sukernik, R.I. (1994). Virological and genetic studies relate Amerind origins to the indigenous people of the Mongolia/Manchuria/southeastern Siberia region. Proc. Natl. Acad. Sci. USA 91, 10737-10741.
52. Nei, M. (1972). Genetic distances between populations. Am. Nat. 106, 283.
53. Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70, 3321-3323.
54. Nei, M., Tajima, F. & Tateno, Y. (1983). Accuracy of estimated phylogenetic trees from molecular data II. Gene frequency data. J. Mol. Evol. 19, 153-170.
55. Nei, M. & Roychoudbury, A. K. (1993). Evolutionary relationships of human populations on a global scale. Mol. Biol. Evol. 10, 927-943.
56. Novick, G. E., Novick, C. C., Yunis, J., Yunis, E., Antunez de Mayolo, P., Scheer, W. D., Deininger, P. L., Stoneking, M., York, D. S., Batzer, M. A. & Herrera, R. J. (1998). Polymorphic Alu insertions and the Asian origin of Native American populations. Hum. Biol. 70, 23-39.
57. Olivo-Diaz, A., Gomez-Casado, E., Gorodezky, C., Martinez-Laso, J., Longas, J., Gonzalez-Hevilla, M., Alvarez, M. & Arnaiz-Villena, A. (1998). A new HLA-B15 allele (B*1541) found in a Mexican of Nahua (Aztec) descent. Immunogenetics 48, 148-151.
58. Parham, P. & Ohta, T. (1996). Population biology of antigen presentation by MHC class I molecules. Science 272, 67-74.
59. Petzl-Erler, M. L., Gorodezky, C., Layrisse, Z., Klitz, W., Fainboim, L., Vullo, C., Bodmer, J. G., Egea, E., Navarrete, C., Infante, E., et al. (1997). Anthropology report for the Latin-American Region: Amerindian and admixture populations. In Genetic diversity of HLA. Functional and Medical implications, (ed. D. Charron), vol. 1, pp. 337-345. Paris: EDK.
60. Pospelov, L. E., Matrakshin, A. G., Erdynieva, L. S., Malenko, A. F., Afanasiev, K. I., Rubtsova, G. A., Egorov, I. K., Yeremeyev, V. V. & Apt, A. S. (1997). Genetic markers in the Tuvan population of Todja, Siberia. Tissue antigens 49, 629-034.
61. Roitberg-Tambur, A., Witt, C. S., Friedmann, A., Safirman, C., Sherman, L., Battat, S., Nelken, D. & Brautbar, C. (1995). Comparative analysis of HLA polymorphism at the serologic and molecular level in Moroccan and Ashkenazi Jews. Tissue Antigens 46, 104-110.
62. Saitou, N. & Nei, M. (1987). The neighbor-joining method : a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 400-425.
63. Santos, F. R., Rodriguez-Delfin, L., Pena, S. D. J., Moore, J. & Weiss, K. M. (1996). North and South Amerindians may have the same major founder Y chromosome haplotype. Am. J. Hum. Genet. 58, 1309-1370.
64. Santos, F. R., Pandya, A., Tyler-Smith, C., Pena, S. D., Schanfield, M., Leonard, W. R., Osipova, L., Crawford, M. H. & Mitchell, R. J. (1999). The Central Siberian origin for Native American Y chromosomes. Am. J. Hum. Genet. 64, 619-628.
65. Sellier, J. &. Sellier, A. (1993). Atlas des Peuples d'Orient. Paris: La Decouverte.
66. Titus-Trachtenbcrg, E. A., Richards, O., De Stefano, G. F. & Erlich, H. A. (1994). Analysis of HLA class II haplotypes in the Cayapa Indians of Ecuador: A novel DRB1 allele Reveals Evidence for convergent Evolution and Balancing Selection at position 86. Am J Hum Genet 55, 160-167.
67. Tokunaga, K., Sideltseva, E. W., Tanaka, H., Uchikawa, C., Nieda, M., Sideltsev, V. V., Zhuravleva, E., Imanishi, T., Itoh, K. & Akaza, T. (1995). Distribution of HLA antigens and haplotypes in the Buryat population of Siberia. Tissue Antigens 45, 98-102.
68. Tokunaga, K., Imanishi, T., Takahashi, K. & Juji, T. (1996). On the origin and dispersal of East Asian populations as viewed from HLA haplotypes. In Prehistoric mongoloid dispersals (ed. T. Akazawa & E. J. E. Szatmary), pp. 187-197. Oxford: Oxford University Press.
69. Torroni, A., Sukernik, R. I., Schurr, T. G., Starikorskaya, Y. B., Cabell, M. F., Crawford, M. H., Comuzzic, A. G. & Wallace D. C. (1993). mtDNA variation of aboriginal Siberians reveals distinet genetic affinities with Native Americans. Am. J. Hum. Genet. 53, 591-608.
70. Young, F. W. & Bann, C. M. (1996). A Visual Statistics system. In Statistical computing Environments for social Researches (ed. R. A. Stine & J. Fox), pp. 207-230. New York: Sage Publications.
71. Yunis, J. J., Ossa, H., Salazar, M., Delgado, M. B., Deulofeut, R., de la Hoz, A., Bing, D. H., Ramos, O. & Yunis, E. J. (1994). Major histocompatibility complex class II alleles and haplotypes and blood groups of four Amerindian tribes of northern Colombia. Hum. Immunol. 41, 248-258.