Nucleosides and nucleotides. 208. Alternate-strand triple-helix formation by the 3′-3′-linked oligodeoxynucleotides with the anthraquinonyl group at the junction point

Bioconjugate Chemistry

Volumn 12, Issue 4, 2001, Pages 635-642

  Ueno, Y ^a   Mikawa, M ^a   Hoshika, S ^a   Matsuda, A ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL STRUCTURE; CULTURE VESSEL; DNA SYNTHESIS; OLIGODEOXYNUCLEOTIDE; PENTAERYTHRITOL; RESTRICTION ENDONUCLEASE; THERMAL DENATURATION; THERMOSTABILITY; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ENZYMES;

ANTHRAQUINONYL; CONTROLLED PORE GLASS; HYDROXYMETHYL GROUPS; INTERCALATORS; JUNCTION POINT; NONAMERS; OLIGODEOXYNUCLEOTIDES; SYNTHESISED; THERMAL DENATURATIONS; TRIPLE-HELIX FORMATION;

THERMODYNAMIC STABILITY;

EID: 0034920041     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc010023i     Document Type: Article

References (34)

1. Sequence specific recognition and modification of double-helical DNA by oligonucleotides
2. Sequence specific cleavage of double helical DNA by triple helix formation
3. 4
4. Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation
5. Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix
6. Influence of pH on the equilibrium association constants for oligodeoxyribonucleotide-directed triple helix formation at single DNA sites
7. Recognition of double helical DNA by alternate strand triple helix formation
8. Oligonucleotide-directed triple helix formation at adjacent oligopurine and oligopyrimidine DNA tracts by alternate strand recognition
9. n) tracts: Recognition of alternate strands via Pu·PuPy and Py·PuPy base triplets
10. Alternate-strand triplex formation: Modulation of binding to matched and mismatched duplexes by sequence choice in the Pu-Pu-Py Block
11. Alternate-strand DNA triple-helix formation using short acridine-linked oligonucleotides
12. Comparison of antiparallel A.AT and T. AT triplets within an alternate strand DNA triple helix
13. New junction models for alternate-strand triple-helix formation
14. Optimization of alternate-strand triple helix formation at the 5′-TpA-3′ and 5′-ApT-3′ junctions
15. Recognition of mixed-sequence duplex DNA by alternate-strand triple-helix formation
16. DNA triplex formation of oligonucleotide analogues consisting of linker groups and octamer segments that have opposite sugar-phosphate backbone polarities
17. Deoxyoligonucleotides with inverted polarity: Synthesis and use in triple-helix formation
18. Triple-helix formation and cooperative binding by oligodeoxynucleotides with a 3′-3′ internucleotide junction
19. Oligonucleotides tethered via nucleic bases. A potential new set of compounds for alternate strand triple-helix formation
20. 5′-5′ Tethered oligonucleotides via nucleic bases: A potential new set of compounds for alternate strand triple-helix formation
21. Modified oligonucleotides with 5′-5′ interbase semirigid junction for alternate strand triplex formation
22. Recognition of alternating oligopurine/oligopyrimidine tracts of DNA by oligonucleotides with base-to-base linkages
23. Nucleosides and nucleotides. 162. Facile synthesis of 5′-5′-linked oligodeoxyribonucleotides with the potential for triple-helix formation
24. Synthesis and triple helix formation by alternate strand recognition of oligonucleotides containing 3′-3′ phosphodiester bonds
25. Formation of DNA triple helices incorporating blocks of G·GC and T·AT triplets using short acridine-linked oligonucleotides
26. Effect of a triplex-binding ligand on parallel and antiparallel DNA triple helices using short unmodified and acridine-linked oligonucleotides
27. Stable triple helices formed by acridine-containing oligonucleotides with oligopurine tracts of DNA interrupted by one or two pyrimidines
28. Extension of the range of DNA sequences available for triple helix formation: Stabilization of mismatched triplexes by acridine-containing oligonucleotides
29. Triple helix formation: Binding avidity of acridine-conjugated AG motif third strands containing natural, modified and surrogate bases opposed to pyrimidine interruptions in a polypurine target
30. Triple helix formation with short oligonucleotideintercalator conjugates matching the HIV-1 U3 LTR end sequence
31. Stable triple-helical DNA complexes formed by benzopyridoindole- and benzopyridoquinoxaline-oligonucleotide conjugates
32. Conjugates of oligonucleotides with triplex-specific intercalating agents. Stabilization of triple-helical DNA in the promoter region of the gene for the α-subunit of interleukin 2 (IL-2Rα)
33. Naphthalene- and perylene-based linkers for the stabilization of hairpin triplexes
34. Nucleosides and nucleotides. 182. Synthesis of branched oligodeoxynucleotides (branched ODNs) with pentaerythritol at the branch point and their thermal stabilization of triplex formation