Reducing mass degeneracy in SAR by MS by stable isotopic labeling

Journal of Computational Biology

Volumn 8, Issue 1, 2001, Pages 19-36

  Bailey Kellogg, C ^a   Kelley III, J J ^a,b   Stein, C ^a   Donald, B R ^a,b,c  

^a Dartmouth Computer Science Department ^*  (United States)

^b Dartmouth Chemistry Department ^*  (United States)

^c DARTMOUTH COLLEGE   (United States)

Author keywords

Data analysis; Experiment planning; Functional genomics; Mass spectrometry; Methods for biopolymer structure; Protein protein and DNA protein complexes

Indexed keywords

DNA; PROTEIN;

ALGORITHM; ARTICLE; COMPARATIVE STUDY; CONFORMATIONAL TRANSITION; DATA ANALYSIS; DEGENERATION; DNA CLEAVAGE; EXPERIMENT; ISOTOPE LABELING; MASS; MASS SPECTROMETRY; PLANNING; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN DNA BINDING; PROTEIN PROTEIN INTERACTION; STRUCTURE ACTIVITY RELATION;

ALGORITHMS; IMAGE PROCESSING, COMPUTER-ASSISTED; ISOTOPE LABELING; LIGASES; MODELS, CHEMICAL; MODELS, STATISTICAL; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STRUCTURE-ACTIVITY RELATIONSHIP; SUMO-1 PROTEIN; UBIQUITIN-CONJUGATING ENZYMES; UBIQUITINS;

EID: 0034913243     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/106652701300099056     Document Type: Article

References (32)

1. The complexity and approximability of finding maximum feasible subsystems of linear relations
2. On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems
3. The hardness of approximate optima in lattices, codes, and systems of linear equations
4. Proof verification and interactability of approximation problems
5. Probabilistic checking of proofs: A new characterization of NP
6. The NOESY Jigsaw: Automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data
7. Identification of linker regions and domain borders of the transcription activator protein NtrC from Escherichia coli by limited proteolysis, in-gel digestion, and mass spectrometry
8. Multidimensional divide and conquer
9. What can we learn from molecular recognition in protein-ligand complexes for the design of new drugs?
10. Photoaffinity labeling analysis of the interaction of pituitary adenylate-cyclase-activating polypeptide (PACAP) with the PACAP type I receptor
11. Stable isotope assisted MALDI-TOF mass spectrometry allows accurate determination of nucleotide compositions of PCR products
12. 15N-labeled DNA duplexes
13. Site-specific mass tagging with stable isotopes in proteins for accurate and efficient peptide identification
14. Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry
15. Analysis of transcription complexes and effects of ligands by microelectrospray ionization mass spectrometry
16. Approximating clique is almost NP-complete
17. Modeling protein docking using shape complementarity, electrostatics and biochemical information
18. Approximation via partitioning
19. Assessment of conformation parameters as predictors of limited proteolytic sites in native protein structures
20. Direct analysis of protein complexes using mass spectrometry
21. Studying noncovalent protein complexes by electrospray ionization mass spectroscopy
22. 15N double-depletion and FT-ICR mass spectrometry
23. Examination of shape complementarity in docking of unbound proteins
24. Controlling the charge states of large ions
25. Topology of the calmodulin-melittin complex
26. High-resolution multistage MS, MS2, and MS3 matrix-assisted laser desorption/ionization FT-ICR mass spectra of peptides from a single laser shot
27. A novel NMR method for determining the interfaces of large protein-protein complexes
28. Identification of proteins in complexes by solid-phase microextraction/multistep elution/capillary electrophoresis/tandem mass spectrometry
29. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
30. Probing the tertiary structure of proteins by limited proteolysis and mass spectrometry: The case of minibody