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Volumn 81, Issue 4, 2001, Pages 1841-1853

Calculations of free-energy contributions to protein-RNA complex stabilization

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; RNA;

EID: 0034816706     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(01)75836-5     Document Type: Article
Times cited : (22)

References (57)
  • 2
    • 48749148224 scopus 로고
    • Rattle: A "velocity" version of the Shake algorithm for molecular dynamics calculations
    • (1983) J. Chem. Phys. , vol.52 , pp. 24-34
    • Andersen, H.C.1
  • 3
    • 0025261918 scopus 로고
    • Solvent effects on protein association and protein folding
    • (1990) Biopolymers , vol.29 , pp. 567-596
    • Ben-Naim, A.1
  • 7
    • 0033621118 scopus 로고    scopus 로고
    • The propagation of binding interactions to remote sites in proteins: Analysis of the binding of the monoclonal antibody D1.3 to lysozyme
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 10118-10122
    • Freire, E.1
  • 9
    • 0023779259 scopus 로고
    • Calculation of the total electrostatic energy of a macromolecular system: Solvation energies, binding energies, and conformational analysis
    • (1988) Proteins , vol.4 , pp. 7-18
    • Gilson, M.K.1    Honig, B.2
  • 10
    • 0030887944 scopus 로고    scopus 로고
    • Inclusion of loss of translational and rotational freedom in theoretical estimates of free energies of binding: Application to a complex of benzene and mutant T4 lysozyme
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 2707-2714
    • Hermans, J.1    Wang, L.2
  • 11
    • 0028180523 scopus 로고
    • Application of scaled particle theory to model the hydrophobic effect: Implications for molecular association and protein stability
    • (1994) Protein Eng. , vol.7 , pp. 371-383
    • Jackson, R.M.1    Sternberg, M.J.E.2
  • 17
    • 0032559428 scopus 로고    scopus 로고
    • RNA binding mediates the local cooperativity between the beta-sheet and the C-terminal tail of the human U1A RBD1 protein
    • (1998) J. Mol. Biol. , vol.275 , pp. 465-481
    • Kranz, J.K.1    Hall, K.B.2
  • 18
    • 0033534526 scopus 로고    scopus 로고
    • RNA recognition by the human U1A protein is mediated by a network of local cooperative interactions that create the optimal binding surface
    • (1999) J. Mol. Biol. , vol.285 , pp. 215-231
    • Kranz, J.K.1    Hall, K.B.2
  • 23
    • 0030930931 scopus 로고    scopus 로고
    • Thermal unfolding of the N-terminal RNA binding domain of the human U1A protein studies by differential scanning calorimetry
    • (1997) Biophys. Chem. , vol.64 , pp. 111-119
    • Lu, J.1    Hall, K.B.2
  • 33
    • 0032905173 scopus 로고    scopus 로고
    • Free energy determinants of binding the rRNA substrate and small ligands to ricin A-chain
    • (1999) Biophys. J. , vol.76 , pp. 28-39
    • Olson, M.A.1    Cuff, L.2
  • 34
    • 0033970625 scopus 로고    scopus 로고
    • Modeling implicit reorganization in continuum descriptions of protein-protein interactions
    • (2000) Proteins , vol.38 , pp. 115-119
    • Olson, M.A.1    Reinke, L.T.2
  • 40
    • 0034646574 scopus 로고    scopus 로고
    • Structure and thermodynamics of RNA-protein binding: Using molecular dynamics and free energy analyses to calculate the free energy of binding and conformational changes
    • (2000) J. Mol. Biol. , vol.297 , pp. 1145-1158
    • Reyes, C.M.1    Kollman, P.A.2
  • 43
    • 0342321950 scopus 로고    scopus 로고
    • Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease
    • (2000) Proteins , vol.39 , pp. 393-407
    • Sham, Y.Y.1    Chu, Z.T.2    Tao, H.3    Warshel, A.4
  • 45
    • 0032189032 scopus 로고    scopus 로고
    • Calculations of HyHEL10-lysozyme binding free energy changes: Effect of ten point mutations
    • (1998) Proteins , vol.33 , pp. 39-48
    • Sharp, K.A.1
  • 50
    • 0032838372 scopus 로고    scopus 로고
    • Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution
    • (1999) Biophys. J. , vol.77 , pp. 1284-1305
    • Tang, Y.1    Nilsson, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.