Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene

Biodegradation

Volumn 12, Issue 2, 2001, Pages 81-103

  Arp, Daniel J ^a   Yeager, Chris M ^a   Hyman, Michael R ^b  

^a OREGON STATE UNIVERSITY   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Bioremediation; Cometabolism; Cooxidation; Methane monooxygenase; Toluene monooxygenase; Trichloroethylene

Indexed keywords

CATALYSIS; CELLS; ENZYMES; GENES; METABOLISM; MICROORGANISMS;

COMETABOLISM;

BIODEGRADATION;

ALKENE MONOOXYGENASE; AMMONIA MONOOXYGENASE; CARBON TETRACHLORIDE; CHLORINATED HYDROCARBON; CHLORINE; CHLOROFORM; DICHLOROMETHANE; ENZYME; METHANE MONOOXYGENASE; METHYL CHLORIDE; OXIDOREDUCTASE; OXYGENASE; SOLVENT; TOLUENE; TOLUENE 2 MONOOXYGENASE; TOLUENE 4 MONOOXYGENASE; TOLUENE DIOXYGENASE; TOLUENE ORTHO MONOOXYGENASE; TOLUENE ORTHO-MONOOXYGENASE; TRICHLOROETHYLENE; UNCLASSIFIED DRUG; UNSPECIFIC MONOOXYGENASE;

TRICHLOROETHYLENE;

AEROBIC METABOLISM; BACTERIUM; BACTERIUM TRANSFORMATION; BIODEGRADATION; CHEMISTRY; CHLORINATION; ENZYME ANALYSIS; ENZYME METABOLISM; GENE EXPRESSION REGULATION; GENETIC ENGINEERING; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MYCOBACTERIUM VACCAE; NITROSOMONAS; NONHUMAN; OPERON; OXIDATION; PROTEIN BINDING; RALSTONIA EUTROPHA; REVIEW; RHODOCOCCUS; TRANSCRIPTION REGULATION; XANTHOBACTER;

AEROBIOSIS; BACTERIA; BIODEGRADATION, ENVIRONMENTAL; ENZYMES; GENE EXPRESSION REGULATION; GENETIC ENGINEERING; MIXED FUNCTION OXYGENASES; OXIDOREDUCTASES; OXYGENASES; SOLVENTS; TRICHLOROETHYLENE;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM VACCAE; NITROSOMONAS; RALSTONIA; RHODOCOCCUS; WAUTERSIA EUTROPHA; XANTHOBACTER;

EID: 0034752369     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1012089908518     Document Type: Review

References (124)

1. A cometabolic biotransformation model for halogenated aliphatic compounds exhibiting product toxicity
2. Effects of toxicity, aeration, and reductant supply on trichloroethylene transformation by a mixed methanotrophic culture
3. Repression of phenol catabolism by organic acids in Ralstonia eutropha
4. Degradation of trichloroethylene by the ammonia-oxidizing bacterium Nitrosomonas europaea
5. Identification of the Pseudomonas stutzeri OX1 toluene-o-xylene monooxygenase regulatory gene (touR) and of its cognate promoter
6. Ammonia monooxygenase from Nitrosomonas europaea
7. Whole-cell kinetics of trichloroethylene degradation by phenol hydroxylase in a Ralstonia eutropha JMP134 derivative
8. +, and CO oxidation by methanotrophs and nitrifiers
9. Construction and use of an ipb DNA module to generate Pseudomonas strains with constitutive trichloroethylene and isopropylbenzene oxidation activity
10. Dichloromethane as the sole carbon source for an acetogenic mixed culture and isolation of a fermentative, dichloromethane-degrading bacterium
11. Substrate specificities of the solubLe and particulate methane monooxygenases of Methylosinus trichosporium OB3b
12. Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1
13. Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: Role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT
14. Oxidation of trichloroethylene, 1,1-dichloroethylene, and chloroform by toluene/oxylene monooxygenase from Pseudomonas stutzeri OX1
15. Evaluation of toxic effects of aeration and trichloroethylene oxidation on methanotrophic bacteria grown with different nitrogen sources
16. The soluble methane monooxygenase of Methylococcus capsulatus (Bath). Its ability to oxygenate n-alkanes, n-alkenes, ethers, and alicyclic, aromatic and heterocyclic compounds
17. The kinetics of cometabolism
18. Oxidation of p-cresol and related compounds by a Pseudomonas
19. Co- metabolism
20. Bacterial degradation of cyclohexane. Participation of a co-oxidation reaction
21. Genetic evidence for activation of the positive transcriptional regulator, Xy1R, a member of the NtrC family of regulators, by effector binding
22. Trichloroethylene oxidation by the membrane-associated methane monooxygenase in Type I, Type II and Type X methanotrophs
23. Methanotrophic chloroethene transformation capacities and 1,1 dichloroethylene transformation product toxicity
24. Catabolite repression of the toluene degradation pathway in Pseudomonas putida harboring pWWO under various conditions of nutrient limitation in chemostat culture
25. Crystal structure of the hydroxylase component of methane monooxygenase from Methylosinus trichosporium OB3b
26. A cometabolic kinetics model incorporating enzyme inhibition, inactivation and recovery: II Trichloroethylene degradation experiments
27. A cometabolic kinetics model incorporating enzyme inhibition, inactivation and recovery: I Model development, analysis and testing
28. Cometabolic degradation of chlorinated alkenes by alkene monooxygenase in a propylene-grown Xanthobacter strain
29. In vitro activation of ammonia monooxygenase from Nitrosomonas europaea by copper
30. Performance characterization of a model bioreactor for the biodegradation of trichloroethylene by Pseudomonas cepacia G4
31. Phenol and trichloroethylene degradation by Pseudomonas cepacia G4: Kinetics and interactions between substrates
32. Haloalkene oxidation by soluble methane monooxygenase from Methylosinus trichosporium Ob3b: Mechanistic and environmental implications
33. Methane monooxygenase from Methylosinus trichosporium OB3b. Purification and properties of a three-component system with high specific activity from a type II methanotroph
34. Resonance raman evidence for an Fe-O-Fe center in stearoyl-ACP desaturase. Primary sequence identity with other diiron-oxo proteins
35. Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred
36. Efficient degradation of trichloroethylene by a hybrid aromatic ring dioxygenase
37. Alkene monooxygenase from Nocardia corallina B-276 is a member of the class of dinuclear iron proteins capable of stereospecific epoxygenation reactions
38. Molecular analysis of the pmo (particulate methane monooxygenase) operons from two type II methanotrophs
39. Effects of bacterial host and dichloromethane dehalogenase on the competitiveness of methylotrophic bacteria growing with dichloromethane
40. Substrate specificity of soluble methane monooxygenase. Mechanistic implications
41. Inactivation of alkene oxidation by epoxides in alkene and alkane-grown bacteria
42. Trichloroethylene degradation by two independent aromatic degrading pathways in Alcaligenes eutrophus JMP134
43. Microbial metabolism of short-chain unsaturated hydrocarbons
44. Bacterial degradation of vinyl chloride
45. Aerobic vinyl chloride metabolism in Mycobacterium aurum L1
46. Trichloroethylene removal and oxidation toxicity mediated by toluene dioxygenase of Pseudomonas putida
47. New findings in methane-utilizing bacteria highlight their importance in the biosphere and their commercial potential
48. Field evaluation of in situ aerobic cometabolism of trichloroethylene and three dichloroethylene isomers using phenol and toluene as primary substrates
49. Cometabolism: A critique
50. Inhibition, inactivation, and recovery of ammonia-oxidizing activity in cometabolism of trichtoroethylene by Nitrosomonas europaea
51. Suicidal inactivation and labelling of ammonia monooxygenase by acetylene
52. Decomposition of chloro-substituted aliphatic acids by soil bacteria
53. Carbon nutrition of some microorganisms decomposing halogen-substituted aliphatic acids
54. Kinetic studies of ammonia monooxygenase inhibition in Nitrosomonas europaea by hydrocarbons and halogenated hydrocarbons in an optimized whole cell assay
55. Kinetic characterization of the inactivation of ammonia monooxygenase in Nitrosomonas europaea by alkyne, aniline and cyclopropane derivatives
56. A gene encoding a membrane protein exists upstream of the amoA/amoB genes in ammonia oxidizing bacteria: A third member of the amo operon?
57. Oxidation of aliphatic olefins by toluene dioxygenase: Enzyme rates and product identification
58. Engineering a recombinant Deinococcus radiodurans for organopollutant degradation in radioactive mixed waste environments
59. Oxidation products formed from gaseous alkanes by the bacterium Pseudomonas methanica
60. Bacterial oxidation of gaseous alkanes
61. Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria
62. Trichloroethylene oxidation by toluene dioxygenase
63. Biochemistry of the soluble methane monooxygenase
64. Dichloromethane and trichloroethylene inhibition of methane oxidation by the membrane-associated methane monooxygenase of Methylosinus trichosporium OB3b
65. Degradation of toluene and trichloroethylene by Burkholderia cepacia G4 in growth-limited fed-batch culture
66. Induction of toluene oxidation activity in Pseudomonas mendocina KR1 and Pseudomonas sp. strain ENVPC5 by chlorinated solvents and alkanes
67. Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea
68. Purification and characterization of the alkene monooxygenase from Nocardia corallina B-276
69. Genetics and molecular biology of methanotrophs
70. Large isotope effects in methane oxidation catalyzed by methane monooxygenase: Evidence for C - H bond cleavage in a reaction cycle intermediate
71. Fate of 2,2,2-trichloroacetaldehyde (chloral hydrate) produced during trichloroethylene oxidation by methanotrophs
72. Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4
73. Trichloroethylene oxidation by purified toluene 2-monooxygenase: Products, kinetics, and turnover-dependent inactivation
74. Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl)phenol degradative pathway it controls
75. The particulate methane monooxygenase from Methylococcus capsulatus (Bath) is a novel copper-containing three-subunit enzyme: Isolation and characterization
76. Regulation of bacterial methane oxidation: Transcription of the soluble methane monooxygenase operon of Methylococcus capsulatus (Bath) is repressed by copper ions
77. Copper-dependent reciprocal transcriptional regulation of methane monooxygenase genes in Methylococcus capsulatus and Methylosinus trichosporium
78. The active site structure of methane monooxygenase is closely related to the binuclear iron center of ribonucleotide reductase
79. Kinetics of chlorinated hydrocarbon degradation by Methylosinus trichosporium OB3b and toxicity of trichloroethylene
80. Degradation of chlorinated aliphatic hydrocarbons by Methylosinus trichosporium OB3b expressing soluble methane monooxygenase
81. An aromatic-effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF6OO on para-substituted methylphenols
82. Recombinant toluene-4-monooxygenase: Catalytic and Mossbauer studies of the purified diiron and rieske components of a four-protein complex
83. Changes in the regiospecificity of aromatic hydroxylation produced by active site engineering in the diiron enzyme toluene 4-monooxygenase
84. Acetylene as a suicide substrate and active site probe for methane monooxygenase from Methylococcus capsulatus (Bath)
85. Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
86. Factors limiting aliphatic chlorocarbon degradation by Nitrosomonas europaea - Cometabolic inactivation of ammonia monooxygenase and substrate specificity
87. Oxidation of nitrotoluenes by toluene dioxygenase - Evidence for a monooxygenase reaction
88. Crystal structure of a bacterial Non-Haem iron hydroxylase that catalyses the biological oxidation of methane
89. Degradation of trichloroethylene by a linear plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Nocardia corallina) B-276
90. Particulate methane monooxygenase genes in methanotrophs
91. Soluble methane monooxygenase gene clusters from trichloroethylene-degrading Methylosinus sp. strains and detection of methanotrophs during in situ bioremediation
92. Alkene monooxygenase from Xanthobacter strain Py2
93. Monohydroxylation of phenol and 2,5-dichlorophenol by toluene dioxygenase in Pseudomonas putida F1
94. Copper stress underlines the fundamental change in intracellular location of methane mono-oxygenase in methane utilizing organisms: Studies in batch and continuous cultures
95. A comparison of the substrate and electron-donor specificities of the methane monooxygenase from three strains of methane-oxidizing bacteria
96. Fortuitous oxidation and cometabolism of various carbon compounds by whole-cell suspensions of Methylococcus capsulatus (Bath)
97. TOL Reductase: A component of toluene dioxygenase from Pseudomonas putida
98. TOL: A component of toluene dioxygenase from Pseudomonas putida F1
99. 54-dependent Po promoter
100. Evaluation of trichloroethylene degradation by E. coli transformed with dimethyl sulfide monooxygenase genes and/or cumene dioxygenase genes
101. Role of heterotrophic bacteria in complete mineralization of trichloroethylene by Methylocystis sp. strain-M
102. Effect of chlorinated ethene conversion on viability and activity of Methylosinus trichosporium OB3b
103. Transformation kinetics of chlorinated ethenes by Methylosinus trichosporium OB3b and detection of unstable epoxides by on-line gas chromatography
104. Degradation of 1,2-dichloroethane by Ancylobacter aquaticus and other facultative methylotrophs
105. Chloromethane metabolism by Methylobacterium sp. Strain CM4
106. Co-metabolism: Is the emperor wearing any clothes?
107. Toxicity of trichloroethylene to Pseudomonas putida F1 is mediated by toluene dioxygenase
108. Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putida
109. Metabolism of polyhalogenated compounds by a genetically engineered bacterium
110. Toluene-4-monooxygenase, a three-component enzyme system that catalyzes the oxidation of toluene to p-cresol in Pseudomonas mendocina KR1
111. Biological methane activation involves the intermediacy of carbon-centered radicals
112. Further evidence for multiple pathways in soluble methane-monooxygenase-catalysed oxidations from the measurement of deuterium kinetic isotope effects
113. Binuclear iron centres in proteins
114. Efficient degradation of trichloroethylene by a recombinant Escherichia coli
115. Rhizoremediation of trichloroethylene by a recombinant, root-colonizing Pseudomonas fluorescens strain expressing toluene orthomonooxygenase constitutively
116. Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase
117. Carbon-source-dependent expression of the PalkB promoter from the Pseudomonas oleovarans alkane degradation pathway
118. Evidence for an iron center in the ammonia monooxygenase from Nitrosomonas europaea
119. Membrane-associated methane monooxygenase from Methylococcus capsulatus (Bath)
120. The alkene monooxygenase from Xanthobacter strain Py2 is closely related to aromatic monooxygenases and catalyzes aromatic monohydroxylation of benzene, toluene, and phenol
121. Toluene degradation by Pseudomonas putida F1: Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli