Sugarcane yellow leaf virus: An emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors

Virology

Volumn 269, Issue 1, 2000, Pages 156-171

  Moonan, Francis ^a   Molina, Joe ^a   Mirkov, T Erik ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; EVOLUTION; GENETIC RECOMBINATION; LUTEOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT VIRUS; PRIORITY JOURNAL; SUGARCANE YELLOW LEAF VIRUS;

ACRONICTA LEPORINA; ANIMALIA; BIKINIA LE-TESTUI; ENAMOVIRUS; GLYCINE MAX; LUTEOVIRUS; PEA ENATION MOSAIC VIRUS; PEA ENATION MOSAIC VIRUS-1; PISUM SATIVUM; POLEROVIRUS; RNA VIRUSES; SACCHARUM HYBRID CULTIVAR; SOYBEAN DWARF VIRUS; SUGARCANE YELLOW LEAF VIRUS;

EID: 0034732142     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1999.0162     Document Type: Article

References (52)

1. Aaziz R., Tepfer M. Recombination in RNA viruses and in virus-resistant transgenic plants. J. Gen. Virol. 83:1999;1339-1346.
2. Allen E., Wang S., Miller W. A. Barley yellow dwarf virus RNA requires a cap independent translation sequence because it lacks a 5′ cap. Virology. 253:1999;139-144.
3. Ashoub A., Rohde W., Prufer D. In planta transcription of a second subgenomic RNA increases the complexity of the subgroup 2 luteovirus genome. Nucleic Acids Res. 26:1998;420-426.
4. Baulcombe D. C. Mechanisms of pathogen-derived resistance to viruses in transgenic plants. Plant Cell. 8:1996;1833-1844.
5. Baulcombe D. C., English J. J. Ectopic pairing of homologous DNA and post-transcriptional gene silencing in transgenic plants. Curr. Opin. Biotech. 7:1996;173-180.
6. Borth W., Hu J. S., Schenck S. Double-stranded RNA associated with sugarcane yellow leaf syndrome. Sugar Cane. 3:1994;5-8.
7. Brown C. M., Dinesh-Kumar S. P., Miller W. A. Local and distant sequences are required for efficient readthrough of the Barley yellow dwarf virus PAV coat protein gene stop codon. J. Virol. 70:1996;5884-5892.
8. Chaloub B. A., Lapierre H. D. Importance des recombinaisions ARN dans l'evolution des luteovirus. Agronomie. 15:1996;393-400.
9. Comstock J. C., Irey M. S., Lockhart B. E. L., Wang Z. K. Incidence of yellow leaf syndrome in CP cultivars based on polymerase chain reaction and serological techniques. Sugar Cane. 4:1998;21-24.
10. Cooper D. D., Steiner-Pryor A., Scotti P. D., Delong D. On the nature of poliovirus genetic recombinants. J. Gen. Virol. 23:1974;41-49.
11. D'Arcy C. J., Mayo M. Proposals for changes in luteovirus taxonomy and nomenclature. Arch. Virol. 142:1997;1285-1287.
12. de Miranda J. R., Stevens M., de Bruyne E., Smith H. G., Bird C., Hull R. Sequence comparison and classification of beet luteovirus isolates. Arch. Virol. 140:1995;2183-2200.
13. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:1984;387-395.
14. Dinesh-Kumar S. P., Brault V., Miller W. A. Precise mapping and in vitro translation of a trifunctional subgenomic RNA of barley yellow dwarf virus. Virology. 187:1993;711-722.
15. Esau K. Phloem degeneration in Gramineae affected by the barley yellow dwarf virus. Am. J. Bot. 44:1957;245-251.
16. Feselstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 38:1985;16-24.
17. Gibbs M. J., Cooper J. I. A recombinational event in the history of luteoviruses, probably induced by base-pairing between the genomes of two distinct viruses. Virology. 206:1995;1129-1132.
18. Grassly N. C., Holmes E. C. A likelihood method for the detection of selection and recombination using sequence data. Mol. Biol. Evol. 14:1997;239-247.
19. Hasegawa M., Kishino H., Yano T. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:1985;160-174.
20. Higgins D. G., Bleasby A. J., Fuchs R. Clustal V: Improved software for multiple sequence alignment. Comp. Appl. Biosci. 8:1992;189-191.
21. Ingelbrecht I., Irvine J. E., Mirkov T. E. Posttranscriptional gene silencing in transgenic sugarcane. Dissection of homology-dependent virus resistance in a monocot that has a complex polyploid genome. Plant Physiol. 119:1999;1187-1197.
22. Kelly L., Gerlach W. L., Waterhouse P. M. Characterization of the subgenomic RNAs of an Australian isolate of barley yellow dwarf luteovirus. Virology. 202:1994;565-573.
23. Koev G., Mohan B. R., Miller W. A. Primary and secondary structural elements required for synthesis of Barley yellow dwarf virus subgenomic RNA 1. J. Virol. 73:1999;2876-2885.
24. Koonin E. V., Dolja V. V. Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. 28:1993;375-430.
25. Martin R. R., Keese P. K., Young M. J., Waterhouse P. M., Gerlach W. L. Evolution and molecular biology of luteoviruses. Annu. Rev. Phytopathol. 28:1990;341-363.
26. Mayo M. A., Pringle C. R. Virus taxonomy - 1997. J. Gen. Virol. 79:1998;649-657.
27. Mayo M. A., Robinson C. A., Jolly C. A., Hyman L. Nucleotide sequence of potato leaf roll luteovirus RNA. J. Gen. Virol. 70:1989;1037-1051.
28. Mayo M. A., Ziegler-Graff V. Molecular biology of luteoviruses. Adv. Virus Res. 46:1996;416-468.
29. Miller W. A., Dinesh-Kumar S. P., Paul C. P. Luteovirus gene expression. Crit. Rev. Plant Sci. 14:1995;179-211.
30. Miller W. A., Koev G., Mohan B. R. Are there risks associated with transgenic resistance to luteoviruses. Plant Dis. 81:1997;700-710.
31. Miller J. S., Mayo M. A. The location of the 5′ end of the potato leafroll subgenomic coat protein mRNA. J. Gen. Virol. 72:1991;2633-2638.
32. Miller W. A., Waterhouse P. M., Gerlach W. L. Sequence and organization of Barley yellow dwarf virus genomic RNA. Nucleic Acids Res. 16:1988;6097-6111.
33. Mohan B. R., Dinesh-Kumar S. P., Miller W. A. Genes and cis-acting sequences involved in replication of Barley yellow dwarf virus PAV RNA. Virology. 212:1995;186-195.
34. Murphy, F. A, Fauquet, C. M, Bishop, D. H. L, Ghabrial, S. A, Jarvis, A. W, Martelli, G. P, Mayo, M. A, and, Summers, M. D. 1995, Virus taxonomy: The sixth report of the International Committee on Taxonomy of Viruses, Springer Verlag, Wien.
35. Murphy J. F., D'Arcy C. J., Clark J. M. J. Barley yellow dwarf virus has a 5′ terminal genome-linked protein. J. Gen. Virol. 70:1989;2253-2256.
36. Nagy P. D., Simon A. E. New insights to the mechanisms of RNA recombination. Virology. 235:1997;1-9.
37. Pringle C. R. Virus taxonomy - San Diego 1998. Arch. Virol. 143:1998;203-210.
38. Pringle C. R. Virus taxonomy 1999: The universal system of virus taxonomy, updated to include the new proposals ratified by the International Committee on Taxonomy of Viruses during 1998. Arch. Virol. 144:1999;421-429.
39. Rathjen J. P., Karageorgos L. E., Habili N., Waterhouse P. M., Symons R. H. Soybean dwarf luteovirus contains the third variant genome type in the luteovirus group. Virology. 198:1994;671-679.
40. Regenmortel, M. H. V, Fauquet, C. M, and, Bishop, D. H. L. In Press, Virus Taxonoy: Seventh Report of the International Committe on Taxonomy of Viruses, Academic Press, New York.
41. Reutenauer A., Ziegler-Graff V., Lot H., Scheidecker D., Guilley H., Richards K., Jonard G. Identification of beet western yellows luteovirus genes implicated in viral replication and particle morphogenesis. Virology. 195:1993;692.
42. Robertson N. L., French R., Gray S. M. Use of group specific primers and the polymerase chain reaction for the detection and identification of luteoviruses. J. Gen. Virol. 72:1991;1473-1477.
43. Roossinck M. J. Mechanisms of plant virus evolution. Annu. Rev. Phytopathol. 35:1997;191-209.
44. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
45. Sambrook, J, Fritsch, E. F, and, Maniatis, B. E. L. 1989, Molecular Cloning, 2nd Ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
46. Scagliusi S., Lockhart B. E. Transmission, characterization, and serology of a luteovirus associated with yellow leaf syndrome of sugarcane. Phytopathology. 90:2000;120-124.
47. Schenk S., Hu J. S., Lockhart B. E. Use of a tissue blot immunoassay to determine the distribution of sugarcane yellow leaf virus in Hawaii. Sugar Cane. 4:1997;5-8.
48. Simon A. E., Bujarski J. J. RNA-RNA recombination and evolution in virus infected plants. Annu. Rev. Phytopathol. 32:1994;337-362.
49. Vega J., Scalagusi S. M. M., Ulain E. U. Sugarcane yellow leaf disease in Brazil: Evidence of association with a luteovirus. Plant Dis. 81:1997;21-26.
50. Van der Wilk F., Verbeek M., Dullemans A. M., van den Heuvel J. F. The genome-linked protein of Potato leafroll virus is located downstream of the putative protease domain of the ORF 1 product. Virology. 234:1997;300-303.
51. Wobus C. E., Skaf J. S., Schultz M. H., de Zoeten G. A. Sequencing, genomic localization and initial characterization of the VPg of pea enation mosaic Enamovirus. J. Gen. Virol. 79:1998;2023-2025.
52. Yang Z. N., Mirkov T. E. Sequence and relationships of Sugarcane mosaic and Sorghum mosaic virus strains and development of RT-PCR based RFLPs for strain discrimination. Phytopathology. 87:1997;932-939.