Sequence and relationships of sugarcane mosaic and sorghum mosaic virus strains and development of RT-PCR-based RFLPS for strain discrimination

Phytopathology

Volumn 87, Issue 9, 1997, Pages 932-939

  Yang, Z N ^a   Mirkov, T E ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SACCHARUM HYBRID CULTIVAR; SORGHUM BICOLOR; SORGHUM MOSAIC VIRUS; SUGARCANE MOSAIC VIRUS;

EID: 0030867178     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.1997.87.9.932     Document Type: Article

References (24)

1. Abbot, E. V., and Tippett, R. L. 1966. Strains of sugarcane mosaic virus. U.S. Dep. Agric. Res. Serv. Tech. Bull. 1340:1-25.
2. Atreya, P. L., Atreya, C. D., and Pirone, T. P. 1991. Amino acid substitutions in the coat protein result in loss of insect transmissibility of a plant virus. Proc. Natl. Acad. Sci. U.S.A. 88:7887-7891.
3. Colinet, D., and Kummert, J. 1993. Identification of a sweet potato feathery mottle virus isolate from China (SPFMV-CH) by the polymerase chain reaction with degenerate primers. J. Virol. Methods 45: 149-159.
4. Devereux, J., Haeberli, P., and Smithies, O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
5. Frenkel, M. J., Jilka, J. M., McKern, N. M., Strike, P. M., Clark, J. J. M., Shukla, D. D., and Ward, C. W. 1991. Unexpected sequence diversity in the amino-terminal ends of the coat proteins of strains of sugarcane mosaic virus. J. Gen. Virol. 72:237-242.
6. Grisham, M. P. 1994. Strains of sorghum mosaic virus causing sugarcane mosaic in Louisiana. Plant Dis. 78:729-732.
7. Koike, H., and Gillaspie, A. G. 1989. Mosaic. Pages 301-322 in: Diseases of Sugarcane - Major Diseases. C. Ricaud, B. T. Eagan, and A. G. Gillaspie, eds. Science Publishers, Amsterdam.
8. Lesemann, D. E., Shukla, D. D., Tosic, M., and Huth, W. 1992. Differentiation of the four viruses of the sugarcane mosaic virus subgroup based on cytopathology. Arch. Virol. Suppl. 5:353-361.
9. Louie, R., and Knoke, J. K. 1975. Strains of maize dwarf mosaic virus. Plant Dis. Rep. 59:518-522.
10. Matthews, R. E. F. 1982. Classification and nomenclature of viruses. Fourth report of the International Committee on Classification of Viruses. Intervirology 17:1-99.
11. McKern, N. M., Shukla, D. D., Toler, R. W., Jensen, S. G., Tosic, M., Ford, R. E., Leon, O., and Ward, C. W. 1991. Confirmation that the sugarcane mosaic virus subgroup consists of four distinct potyviruses by using peptide profiles of coat proteins. Phytopathology 81:1025-1029.
12. Mink, G. I., Vetten, H. J., Ward, C. W., Berger, P. H., Morales, F. J., Myers, J. M., Silbernagel, M. J., and Barnett, O. W. 1994. Taxonomy and classification of legume-infecting potyviruses. A proposal from the Potyviridae Study Group of the Plant Virus Subcommittee of the ICTV. Arch. Virol. 139:231-235.
13. Pirone, T. P. 1972. Sugarcane mosaic virus. No. 88 in: Descriptions of Plant Viruses. Commonw. Mycol. Inst./Assoc. Appl. Biol., Kew, Surrey, England.
14. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
15. Shukla, D. D., Frenkel, M. J., and Ward, C. W. 1991. Structure and function of the potyvirus genome with special reference to the coat protein coding region. Can. J. Plant Pathol. 13:178-191.
16. Shukla, D. D., Tosic, M., Jilka, J., Ford, R. E., Toler, R. W., and Langham, M. A. C. 1989. Taxonomy of potyviruses infecting maize, sorghum, and sugarcane in Australia and the United States as determined by reactivities of polyclonal antibodies directed towards virus-specific N-termini of coat proteins. Phytopathology 79:223-229.
17. Shukla, D. D., and Ward, C. W. 1988. Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J. Gen. Virol. 69:2703-2710.
18. Shukla, D. D., Ward, C. W., and Brunt, A. A. 1994. The sugarcane mosaic virus subgroup. Pages 360-371 in: The Potyviridae. CAB International, Wallingford, United Kingdom.
19. Smith, G. R., and van de Velde, R. 1994. Detection of sugarcane mosaic virus and Fiji disease virus in diseased sugarcane using the polymerase chain reaction. Plant Dis. 78:557-561.
20. Teakle, D. S., Shukla, D. D., and Ford R. E. 1989. Sugarcane mosaic virus. No. 342 (no. 88 revised) in: Descriptions of Plant Viruses. Commonw. Mycol. Inst./Assoc. Appl. Biol., Kew, Surrey, England.
21. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
22. Tosic, M., Ford, R. E., Moline, H. E., and Mayhew, D. E. 1974. Comparison of techniques for purification of maize dwarf and sugarcane mo saic viruses. Phytopathology 64:439-442.
23. Ward, C. W., McKern, N. M., Frenkel, M. J., and Shukla, D. D. 1992. Sequence data as the major criterion for potyvirus classification. Arch. Virol. Suppl. 5:283-297.
24. Xiao, X. W., Frenkel, M. J., Teakle, D. S., Ward, C. W., and Shukla, D. D. 1993. Sequence diversity in the surface-exposed amino-terminal region of the coat proteins of seven strains of sugarcane mosaic virus correlates with their host range. Arch. Virol. 132:399-408.