Stopped-flow fluorescence studies of HMG-domain protein binding to cisplatin-modified DNA

Biochemistry

Volumn 39, Issue 29, 2000, Pages 8426-8438

  Jamieson, Elizabeth R ^a   Lippard, Stephen J ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CISPLATIN; DEOXYURIDINE;

ARTICLE; BINDING AFFINITY; CHEMICAL REACTION KINETICS; COMPLEX FORMATION; CROSS LINKING; DISSOCIATION CONSTANT; DNA ADDUCT; DNA PROBE; FLUORESCENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN;

AMINO ACID SEQUENCE; ANTINEOPLASTIC AGENTS; BASE SEQUENCE; CISPLATIN; DNA; DNA PROBES; HIGH MOBILITY GROUP PROTEINS; HUMANS; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, FLUORESCENCE;

EID: 0034713822     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi000342h     Document Type: Article

References (51)

1. Zamble, D. B., and Lippard, S. J. (1999) in Cisplatin: Chemistry and Biochemistry of a Leading Anticancer Drug (Lippert, B., Ed.) pp 73-110, Verlag Helvetica Chimica Acta, Zurich.
2. Jamieson, E. R., and Lippard, S. J. (1999) Chem. Rev. 99, 2467-2498.
3. Loehrer, P. J., and Einhorn, L. H. (1984) Ann. Intern. Med. 100, 704-713.
4. Morris, M., Eifel, P. J., Lu, J., Grigsby, P. W., Levenback, C., Stevens, R. E., Rotman, M., Gershenson, D. M., and Mutch, D. G. (1999) N. Engl. J. Med. 340, 1137-1143.
5. Fichtinger-Schepman, A. M. J., van der Veer, J. L., den Hartog, J. H. J., Lohman, P. H. M., and Reedijk, J. (1985) Biochemistry 24, 707-713.
6. Grosschedl, R., Giese, K., and Pagel, J. (1994) Trends Genet. 10, 94-100.
7. Huang, J.-C., Zamble, D. B., Reardon, J. T., Lippard, S. J., and Sancar, A. (1994) Proc. Natl. Acad Sci. U.S.A. 91, 10394-10398.
8. Zamble, D. B., Mu, D., Reardon, J. T., Sancar, A., and Lippard, S. J. (1996) Biochemistry 35, 10004-10013.
9. Brown, S. J., Kellett, P. J., and Lippard, S. J. (1993) Science 261, 603-605.
10. McA'Nulty, M. M., and Lippard, S. J. (1996) Mutat. Res. 362, 75-86.
11. Chow, C. S., Whitehead, J. P., and Lippard, S. J. (1994) Biochemistry 33, 15124-15130.
12. Chow, C. S., Barnes, C. M., and Lippard, S. J. (1995) Biochemistry 34, 2956-2964.
13. Dunham, S. U., and Lippard, S. J. (1997) Biochemistry 36, 11428-11436.
14. Churchhill, M. E. A., Jones, D. N. M., Glaser, T., Hefner, H., Searles, M. A., and Travers, A. A. (1995) EMBO J. 14, 1264-1275.
15. Treiber, D. K., Zhai, X., Jantzen, H.-M., and Essigmann, J. M. (1994) Proc. Natl. Acad Sci. U.S.A. 91, 5672-5676.
16. Lawrence, D. L., Engelsberg, B. N., Farid, R. S., Hughes, E. N., and Billings, P. C. (1993) J. Biol. Chem. 268, 23940-23945.
17. Farid, R. S., Bianchi, M. E., Falciola, L., Engelsberg, B. N., and Billings, P. C. (1996) Toxicol. Appl. Pharmacol. 141, 532-539.
18. Jamieson, E. R., Jacobson, M. P., Barnes, C. M., Chow, C. S., and Lippard, S. J. (1999) J. Biol. Chem. 274, 12346-12354.
19. Jia, Y., Kumar, A., and Patel, S. S. (1996) J. Biol. Chem. 271, 30451-30458.
20. Sha, M., Ferré-D'Amaré, A. R., Burley, S. K., and Goss, D. J. (1995) J. Biol. Chem. 270, 19325-19329.
21. Urbanke, C., and Schaper, A. (1990) Biochemistry 29, 1744-1749.
22. Perez-Howard, G. M., Weil, P. A., and Beechem, J. M. (1995) Biochemistry 34, 8005-8017.
23. Parkhurst, K. M., Brenowitz, M., and Parkhurst, L. J. (1996) Biochemistry 35, 7459-7465.
24. Parkhurst, K. M., Richards, R. M., Brenowitz, M., and Parkhurst, L. J. (1999) J. Mol. Biol. 289, 1327-1341.
25. Barawkar, D. A., and Ganesh, K. N. (1994) Biochem. Biophys. Res. Commun. 203, 53-58.
26. Barawkar, D. A., and Ganesh, K. N. (1995) Nucleic Acids Res. 23, 159-164.
27. Yamagata, A., Masui, R., Kato, R., Nakagawa, N., Ozaki, H., Sawai, H., Kuramitsu, S., and Fukuyama, K. (2000) J. Biol. Chem. 275, 13235-13242.
28. Pil, P. M., and Lippard, S. J. (1992) Science 256, 234-237.
29. Ohndorf, U.-M., Rould, M. A., He, Q., Pabo, C. O., and Lippard, S. J. (1999) Nature 399, 708-712.
30. Poklar, N., Pilch, D. S., Lippard, S. J., Redding, E. A., Dunham, S. U., and Breslauer, K. J. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 7606-7611.
31. Jadhav, V. R., Barawkar, D. A., and Ganesh, K. N. (1999) J. Phys. Chem. B 103, 7383-7385.
32. Drees, B. L., Rye, H. S., Glazer, A. N., and Nelson, H. C. M. (1996) J. Biol. Chem. 271, 32168-32173.
33. Cantor, C. R., and Schimmel, P. R. (1980) Biophysical Chemistry, Vol. 2, W. H. Freeman and Co., San Francisco.
34. Sjöback, R., Nygren, J., and Kubista, M. (1995) Spectrochim. Acta, Part A 51, L7-L21.
35. Payet, D., Hillisch, A., Lowe, N., Diekmann, S., and Travers, A. (1999) J. Mol. Biol. 294, 79-91.
36. Murphy, F. V., IV, Sweet, R. M., and Churchill, M. E. A. (1999) EMBO J. 18, 6610-6618.
37. Allain, F. H.-T., Yen, Y.-M., Masse, J. E., Schultze, P., Dieckmann, T., Johnson, R. C., and Feigon, J. (1999) EMBO J. 18, 2563-2579.
38. Love, J. J., Li, X., Case, D. A., Giese, K., Grosschedl, R., and Wright, P. E. (1995) Nature 376, 791-795.
39. Werner, M. H., Huth, J. R., Gronenborn, A. M., and Clore, G. M. (1995) Cell 81, 705-714.
40. Lycksell, P.-O., Gräslund, A., Claesens, F., McLaughlin, L. W., Larsson, U., and Rigler, R. (1987) Nucleic Acids Res. 15, 9011-9025.
41. Patel, N., Berglund, H., Nilsson, L., Rigler, R., McLaughlin, L. W., and Gräslund, A. (1992) Eur. J. Biochem. 203, 361-366.
42. Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P., and Dickerson, R. E. (1985) J. Mol. Biol. 183, 553-563.
43. Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P., and Dickerson, R. E. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 1376-1380.
44. Marky, L. A., and Breslauer, K. J. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 4359-4363.
45. Hsieh, M., and Brenowitz, M. (1997) J. Biol. Chem. 272, 22092-22096.
46. Webb, M., and Thomas, J. O. (1999) J. Mol. Biol. 294, 373-387.
47. Giese, K., Amsterdam, A., and Grosschedl, R. (1991) Genes Dev. 5, 2567-2578.
48. Yamamoto, A., Ando, Y., Yoshioka, K.-I., Saito, K., Tanabe, T., Shirakawa, H., and Yoshida, M. (1997) J. Biochem. 122, 586-594.
49. Patrick, S. M., and Turchi, J. J. (1998) Biochemistry 37, 8808-8815.
50. He, Q., Liang, C. H., and Lippard, S. J. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 5768-5772.
51. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.