New reactions in the crotonase superfamily: Structure of methylmalonyl CoA decarboxylase from Escherichia coli

Biochemistry

Volumn 39, Issue 16, 2000, Pages 4630-4639

  Benning, Matthew M ^a   Haller, Toomas ^b   Gerlt, John A ^b   Holden, Hazel M ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENOYL COENZYME A HYDRATASE; METHYLMALONYL COENZYME A CARBOXYLTRANSFERASE;

ARTICLE; BACTERIAL GENE; CATALYSIS; ENZYME ACTIVE SITE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; STRUCTURE ACTIVITY RELATION; X RAY CRYSTALLOGRAPHY;

ACYL COENZYME A; APOENZYMES; BINDING SITES; CARBOXY-LYASES; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; ENOYL-COA HYDRATASE; ESCHERICHIA COLI; HYDROGEN BONDING; HYDROLASES; LEAST-SQUARES ANALYSIS; LIGANDS; METHYLMALONYL-COA DECARBOXYLASE; MODELS, CHEMICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PROTEIN BINDING; PROTEIN CONFORMATION; STRUCTURE-ACTIVITY RELATIONSHIP; SULFIDES;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0034712697     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9928896     Document Type: Article

References (31)

1. Stern, J. R. (1955) Methods Enzymol. 1, 559-566.
2. Stoffel, W., and Grol, M. (1978) Hoppe-Seyler's Z. Physiol. Chem. 359, 1777-1782.
3. Chen, L.-S., Jin, S.-J., and Tserng, K. Y. (1994) Biochemistry 33, 10527-10534.
4. Kleber, H.-P. (1997) FEMS Microbiol. Lett. 147, 1-9.
5. Gasson, M. J., Kitamura, Y., McLauchlan, W. R., Narbad, A., Parr, A. J., Parsons, E. L. H., Payne, J., Rhodes, M. J. C., and Walton, N. J. (1998) J. Biol. Chem. 273, 4163-4170.
6. Sharma, V., Suvarna, K., Meganathan, R., and Hudspeth, M. E. (1992) J. Bacteriol. 174, 5057-5062.
7. Igbavboa, U., and Leistner, E. (1990) Eur. J. Biochem. 192, 441-449.
8. Pelletier, D. A., and Harwood, C. S. (1998) J. Bacteriol. 180, 2330-2336.
9. Crooks, G. P. and Copley, S. D. (1994) Biochemistry 33, 11645-11649.
10. Loffler, F., Lingens, F., and Muller, R. (1995) Biodegradation 6, 203-212.
11. Chang, K.-H., Liang, P.-H., Beck, W., Scholten, J. D., and Dunaway-Mariano, D. (1992) Biochemistry 31, 5605-5610.
12. Shimomura, Y., Murakami, T., Fujitsuka, N., Nakai, N., Sato, Y., Sugiyama, S., Shimomura, N., Irwin, J., Hawes, J. W., and Harris, R. A. (1994) J. Biol. Chem. 269, 14248-14253.
13. Hawes, J. W., Jaskiewicz, J., Shimomura, Y., Huang, B., Bunting, J., Harper, E. T., and Harris, R. A. (1996) J. Biol. Chem. 271, 26430-26434.
14. Xiang, H., Luo, L., Taylor, K. L., and Dunaway-Mariano, D. (1999) Biochemistry 38, 7638-7652.
15. Engel, C. K., Mathieu, M., Zeelen, J. P., Hiltunen, J. K., and Wierenga, R. K. (1996) EMBO J. 15, 5135-5145.
16. Engel, C. K., Kiema, T. R., Hiltunen, J. K., and Wierenga, R. K. (1998) J. Mol. Biol. 275, 847-859.
17. Benning, M. M., Taylor, K. L., Liu, R.-Q., Yang, G., Xiang, H., Wesenberg, G., Dunaway-Mariano, D., and Holden, H. M. (1996) Biochemistry 35, 8103-8109.
18. Modis, Y., Filppula, S. A., Novikov, D. K., Norledge, B., Hiltunen, J. K., and Wierenga, R. K. (1998) Structure 6, 957-970.
19. Babbitt, P. C., Hasson, M. S., Wedekind, J. E., Palmer, D. R. J., Barrett, W. C., Reed, G. H., Rayment, I., Ringe, D., Kenyon, G. L., and Gerlt, J. A. (1996) Biochemistry 35, 16489-16501.
20. Babbitt, P. C., Mrachko, G. T., Hasson, M. S., Huisman, G. W., Kolter, R., Ringe, D., Petsko, G. A., Kenyon, G. L., and Gerlt, J. A. (1995) Science 267, 1159-1161.
21. Blattner, F. R., Plunkett, G., Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B., and Shao, Y. (1997) Science 277, 1453-1474.
22. Mancia, F., Smith, G. A., and Evans, P. R. (1999) Biochemistry 38, 7999-8005.
23. Haller, T., Buckel, T., Rétey, J, and Gerlt, J. A. (2000) Biochemistry 39, 4622-4629.
24. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 67-71.
25. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 916-924.
26. Terwilliger, T. C., and Eisenberg, D. (1983) Acta Crystallogr. A39, 813-817.
27. Bricogne, G. (1976) Acta Crystallogr. A32, 832-837.
28. Tronrud, D. E., Ten Eyck, L. F., and Matthews, B. W. (1987) Acta Crystallogr. Sect. A 43, 489-501.
29. Rossmann, M. G. (1972) The Molecular Replacement Method, Gordon and Breach, New York.
30. Navaza, J. (1994) Acta Crystallogr. A50, 157-163.
31. Lee, B., and Richards, F. M. (1971) J. Mol. Biol. 55, 379-400.