Internal packing of helical membrane proteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 11, 2000, Pages 5796-5801

  Eilers, Markus ^a   Shekar, Srinivasan C ^a   Shieh, Ted ^b,c   Smith, Steven O ^a   Fleming, Patrick J ^b  

^a STONY BROOK UNIVERSITY   (United States)

^b YALE UNIVERSITY   (United States)

^c JP Morgan Chase & Co   (United States)

Author keywords

Helix interactions; Occluded surface

Indexed keywords

ALANINE; GLYCINE; LEUCINE; MEMBRANE PROTEIN; PROTEIN;

ARTICLE; CONTROLLED STUDY; HYDROPHOBICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE;

AMINO ACIDS; ANIMALS; MEMBRANE PROTEINS; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY;

EID: 0034705142     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.11.5796     Document Type: Article

References (47)

1. Richards, F. M. (1974) J. Mol. Biol. 82, 1-14.
2. Varadarajan, R., Richards, F. M. & Connelly, P. R. (1990) Curr. Sci. 59, 819-824.
3. Richards, F. M. (1997) Cell. Mol. Life Sci. 53, 790-802.
4. Wang, L., Veenstra, D. L., Radmer, R. J. & Kollman, P. A. (1998) Proteins Struct. Funct. Genet. 32, 438-458.
5. DeDecker, B. S., O'Brien, R., Fleming, P. J., Geiger, J. H., Jackson, S. P. & Sigler, P. B. (1996) J. Mol. Biol. 264, 1072-1084.
6. Ponder, J. W. & Richards, F. M. (1987) Cold Spring Harbor Symp. Quant. Biol. 52, 421-428.
7. Gregoret, L. M. & Cohen, F. E. (1990) J. Mol. Biol. 211, 959-974.
8. Pattabiraman, N., Ward, K. B. & Fleming, P. J. (1995) J. Mol. Recognit. 8, 334-344.
9. Kono, H., Nishiyama, M., Tanokura, M. & Doi, J. (1998) Protein Eng. 11, 47-52.
10. Feher, G., Allen, J. P., Okamura, M. Y. & Rees, D. C. (1989) Nature (London) 339, 111-116.
11. Zhang, Z., Huang, L., Shulmeister, V. M., Chi, Y. I., Kim, K. K., Hung, L. W., Crofts, A. R., Berry, E. A. & Kim, S. H. (1998) Nature (London) 392, 677-684.
12. Doyle, D. A., Cabral, J. M., Pfuetzner, R. A., Kuo, A., Gulbis, J. M., Cohen, S. L., Chait, B. T. & Mackinnon, R. (1998) Science 280, 69-77.
13. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. & Yoshikawa, S. (1996) Science 272, 1136-1144.
14. Grigorieff, N., Ceska, T. A., Downing, K. H., Baldwin, J. M. & Henderson, R. (1996) J. Mol. Biol. 259, 393-421.
15. Kimura, Y., Vassylyev, D. G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T. & Fujiyoshi, Y. (1997) Nature (London) 389, 206-211.
16. Koepke, J., Hu, X., Muenke, C., Schulten, K. & Michel, H. (1996) Structure 4, 581-597.
17. Iwata, S., Lee, J. W., Okada, K., Lee, J. K., Iwata, M., Rasmussen, B., Link, T. A., Ramaswamy, S. & Jap, B. K. (1998) Science 281, 64-71.
18. Deisenhofer, J. & Michel, H. (1989) Science 245, 1463-1473.
19. Chang, G., Spencer, R. H., Lee, A. T., Barclay, M. T. & Rees, D. C. (1998) Science 282, 2220-2226.
20. Iverson, T. M., Luna-Chavez, C., Cecchini, G. & Rees, D. C. (1999) Science 284, 1961-1966.
21. Cowan, S. W. (1993) Curr. Opin. Struct. Biol. 3, 501-507.
22. Unwin, N. (1993) J. Mol. Biol. 229, 1101-1124.
23. Galzi, J. L. & Changeux, J. P. (1994) Curr. Opin. Struct. Biol. 4, 554-565.
24. Popot, J. L. & Engelman, D. M. (1990) Biochemistry 29, 4031-4037.
25. Fleming, K. G., Ackerman, A. L. & Engelman, D. M. (1997) J. Mol. Biol. 272, 266-275.
26. Michie, A. D., Orengo, C. A. & Thornton, J. M. (1996) J. Mol. Biol. 262, 168-185.
27. Ballesteros, J. A. & Weinstein, H. (1992) Biophys. J. 62, 107-109.
28. Zhang, D. & Weinstein, H. (1994) FEBS Lett. 337, 207-212.
29. Arkin, I. T. & Brunger, A. T. (1998) Biochim. Biophys. Acta 1429, 113-128.
30. Brandi, C. J. & Deber, C. M. (1986) Proc. Natl. Acad. Sci. USA 83, 917-921.
31. Deber, C. M., Glibowicka, M. & Woolley, G. A. (1990) Biopolymers 29, 149-157.
32. Polinsky, A., Goodman, M., Williams, K. A. & Deber, C. M. (1992) Biopolymers 32, 399-406.
33. Deber, C. M., Sorrell, B. J. & Xu, G. Y. (1990) Biochem. Biophys. Res. Commun. 172, 862-869.
34. Williams, K. A. & Deber, C. M. (1991) Biochemistry 30, 8919-8923.
35. Strehlow, K. G., Robertson, A. D. & Baldwin, R. L. (1991) Biochemistry 30, 5810-5814.
36. Vogel, H. (1992) Q. Rev. Biophys. 25, 433-457.
37. Li, S. C., Goto, N. K., Williams, K. A. & Deber, C. M. (1996) Proc. Natl. Acad. Sci. USA 93, 6676-6681.
38. Wallin, E., Tsukihara, T., Yoshikawa, S., Von Heijne, G. & Elofsson, A. (1997) Protein Sci. 6, 808-815.
39. Javadpour, M. M., Eilers, M., Groesbeek, M. & Smith, S. O. (1999) Biophys. J. 77, 1609-1618.
40. Gray, T. M. & Matthews, B. W. (1984) J. Mol. Biol. 175, 75-81.
41. Pilpel, Y., Ben-Tal, N. & Lancet, D. (1999) J. Mol. Biol. 294, 921-935.
42. Richards, F. M. & Kundrot, C. E. (1988) Proteins 3, 71-84.
43. Rees, D. C., DeAntonio, L. & Eisenberg, D. (1989) Science 245, 510-513.
44. Russ, W. P. & Engelman, D. M. (2000) J. Mol. Biol. 296, 911-919.
45. Stowell, M. H. B. & Rees, D. C. (1995) Adv. Protein Chem. 46, 279-311.
46. Stowell, M. H. B., McPhillips, T. M., Rees, D. C., Soltis, S. M., Abresch, E. & Feher, G. (1997) Science 276, 812-816.
47. Lancaster, C. R. & Michel, H. (1999) J. Mol. Biol. 286, 883-898.