DNA recognition, strand selectivity, and cleavage mode during integrase family site-specific recombination

Journal of Biological Chemistry

Volumn 275, Issue 29, 2000, Pages 22255-22267

  Tribble, Gena ^a   Ahn, Yong Tae ^a   Lee, Jehee ^b   Dandekar, Thomas ^c   Jayaram, Makkuni ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b Jeju National University   (South Korea)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

INTEGRASE; RECOMBINASE;

ARTICLE; ENZYME ACTIVE SITE; ENZYME ANALYSIS; ENZYME SUBSTRATE; MOLECULAR WEIGHT; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; BACTERIA; BASE SEQUENCE; BINDING SITES; DNA; DNA FINGERPRINTING; INTEGRASES; MOLECULAR SEQUENCE DATA; RECOMBINATION, GENETIC; SACCHAROMYCES CEREVISIAE;

SACCHAROMYCES CEREVISIAE;

EID: 0034698020     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M908261199     Document Type: Article

References (50)

1. Esposito, D., and Scocca, J. J. (1997) Nucleic Acids Res. 25, 3605-3614
2. Nunes-Duby, S. E., Kwon, H. J., Tirumalai, R. S., Ellenberger, T., and Landy, A. (1998) Nucleic Acids Res. 26, 391-406
3. Nash, H. A. (1996) in Escherichia coli and Salmonella, Cellular and Molecular Biology (Neidhart, F. C., ed) Vol. 2, pp. 2363-2376, American Society for Microbiology, Washington, D. C.
4. Sadowski, P. D. (1993) FASEB J. 7, 760-767
5. Landy, A. (1993) Curr. Opin. Genet. & Dev. 3, 699-707
6. Lilley, D. M. (1997) Chem. Biol. 4, 717-720
7. Chen, J.-W., Lee, J., and Jayaram, M. (1992) Cell 69, 647-658
8. Evans, B. R., Chen, J. W., Parsons, R. L., Bauer, T. K., Teplow, D. B., and Jayaram, M. (1990) J. Biol. Chem. 265, 18504-18510
9. Gopaul, D. N., Guo, F., and Van Duyne, G. D. (1998) EMBO J. 17, 4175-4187
10. Guo, F., Gopaul, D. N., and Van Duyne, G. D. (1997) Nature 389, 40-46
11. Hickman, A. B., Waninger, S., Scocca, J. J., and Dyda, F. (1997) Cell 89, 227-237
12. Kwon, H. J., Tirumalai, R., Landy, A., and Ellenberger, T. (1997) Science 276, 126-131
13. Pargellis, C. A., Nunes-Duby, S. E., de Vargas, L. M., and Landy, A. (1988) J. Biol. Chem. 263, 7678-7685
14. Parsons, R. L., Prasad, P. V., Harshey, R. M., and Jayaram, M. (1988) Mol. Cell. Biol. 8, 3303-3310
15. Subramanya, H. S., Arciszewska, L. K., Baker, R. A., Bird, L. E., Sherratt, D. J., and Wigley, D. B. (1997) EMBO J. 16, 5178-5187
16. Lee, J., and Jayaram, M. (1995) J. Biol. Chem. 270, 23203-23211
17. Lee, J., Jayaram, M., and Grainge, I. (1999) EMBO J. 18, 784-791
18. Voziyanov, Y., Lee, J., Whang, I., Lee, J., and Jayaram, M. (1996) J. Mol. Biol. 256, 720-735
19. Jayaram, M. (1997) Science 276, 49-51
20. Jayaram, M., and Lee, J. (1995) Trends Genet. 11, 432-433
21. Stark, W. M., and Boocock, M. R. (1995) Trends Genet. 11, 121-123
22. Lee, J., Tonozuka, T., and Jayaram, M. (1997) Genes Dev. 11, 3061-3071
23. Gopaul, D. N., and Van Duyne, G. D. (1999) Curr. Opin. Struct. Biol. 9, 14-20
24. Senecoff, J. F., Rossmeissl, P. J., and Cox, M. M. (1988) J. Mol. Biol. 201, 405-421
25. Gohlke, C., Murchie, A. I., Lilley, D. M., and Clegg, R. M. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 11660-11664
26. Rosen, M. A., Shapiro, L., and Patel, D. J. (1992) Biochemistry 31, 4015-4026
27. Rosen, M. A., Live, D., and Patel, D. J. (1992) Biochemistry 31, 4004-4014
28. Chen, J. W., Evans, B. R., Yang, S. H., Teplow, D. B., and Jayaram, M. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 5944-5948
29. Tirumalai, R. S., Healey, E., and Landy, A. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6104-6109
30. Saxena, P., Whang, I., Voziyanov, Y., Harkey, C., Argos, P., Jayaram, M., and Dandekar, T. (1997) Biochim. Biophys. Acta 1340, 187-204
31. Lee, J., Whang, I., Lee, J., and Jayaram, M. (1994) EMBO J. 13, 5346-5354
32. Shaikh, A. C., and Sadowski, P. D. (1997) J. Biol. Chem. 272, 5695-5702
33. Lee, J., and Jayaram, M. (1995) J. Biol. Chem. 270, 4042-4052
34. Zhu, X. D., Pan, G., Luetke, K., and Sadowski, P. D. (1995) J. Biol. Chem. 270, 11646-11653
35. Lilley, D. M. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 7140-7142
36. Baichoo, N., and Heyduk, T. (1997) Biochemistry 36, 10830-10836
37. Heyduk, T., Heyduk, E., Severinov, K., Tang, H., and Ebright, R. H. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 10162-10166
38. Pan, H., Clary, D., and Sadowski, P. D. (1991) J. Biol. Chem. 266, 11347-11354
39. Panigrahi, G. B., and Sadowski, P. D. (1994) J. Biol. Chem. 269, 10940-10945
40. Guo, F., Gopaul, D. N., and Van Duyne, G. D. (1999) Proc. Natl. Acad Sci. U. S. A. 96, 7143-7148
41. Utatsu, I., Sakamoto, S., Imura, T., and Toh-e, A. (1987) J. Bacteriol. 169, 5537-5545
42. Abremski, K. E., and Hoess, R. H. (1992) Protein Eng. 5, 87-91
43. Argos, W., Landy, A., Abremski, K., Egan, J. B., Haggard-Ljungquist, E., Hoess, R. H., Kahn, M. L., Kalionis, W., Narayama, S. V. L., Pierson, L. S., III, Sternberg, N., and Leong, J. M. (1986) EMBO J. 5, 433-440
44. Bhattacharyya, A., and Lilley, D. M. (1989) Nucleic Acids Res. 17, 6821-6840
45. Bhattacharyya, A., Murchie, A. I., and Lilley, D. M. (1990) Nature 343, 484-487
46. Luetke, K. H., and Sadowski, P. D. (1995) J. Mol. Biol. 251, 493-506
47. Luetke, K. H., and Sadowski, P. D. (1998) Mol. Microbiol. 29, 199-208
48. Luetke, K. H., and Sadowski, P. D. (1998) Nucleic Acids Res. 26, 1401-1407
49. Green, S. M., Gittis, A. G., Meeker, A. K., and Lattman, E. E. (1995) Nat. Struct. Biol. 2, 746-751
50. Cordes, M. H. J., Walh, N. P., McKnight, C. J., and Sauer, R. T. (1999) Science 284, 325-327