Genetic characterization and phylogenetic analysis of HIV-1 subtype C from Uganda

AIDS Research and Human Retroviruses

Volumn 16, Issue 8, 2000, Pages 815-819

  Downing, Robert ^a   Pieniazek, Danuta ^b   Dale J, Hu ^b   Biryahwaho, Benon ^a   Fridlund, Carol ^b   Rayfield, Mark A ^b   Sempala, Sylvester D K ^a   Renu B, Lal ^b,c  

^a UGANDA VIRUS RESEARCH INSTITUTE   (Uganda)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^c CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN GP 41;

ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; HUMAN IMMUNODEFICIENCY VIRUS 1; INDIA; MOZAMBIQUE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTH AFRICA; UGANDA; VIRUS GENE; VIRUS STRAIN; ZIMBABWE;

HIV ENVELOPE PROTEIN GP41; HIV INFECTIONS; HIV-1; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; UGANDA;

EID: 0034690774     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/088922200308819     Document Type: Article

References (17)

1. 1. Hu D, Dondero TJ, Mastro TD, and Gayle HD: Global and molecular epidemiology of HIV. In: AIDS and Other Manifestations of HIV Infection (Wormser GP, ed). Lippincott-Raven, Philadelphia, 1998, pp. 27-40.
2. 2. UNAIDS/WHO: Reports on the Global HIV/AIDS Epidemic, June 1998. World Health Organization, Geneva, Switzerland. (http://ww.who.int/emc-hiv/global_reprt/index.html).
3. 3. Carr JK, Foley BT, Leitner T, Salminen M, Korber B, and McCutchan F (eds.): Human Retrovirus and AIDS - 1998: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences. Los Alamos National Laboratory, Los Alamos, New Mexico, 1998, pp. III10-III19.
4. 4. Simon F, Mauclere P, Roques P, et al.: Identification of a new human immunodeficiency virus type 1 distinct from group M and group O. Nature Med 1998;4:1032-1037.
5. 5. World Health Organization Network for HIV Isolation and Characterization: HIV type 1 variation in WHO-sponsored vaccine evaluation sites: Genetic sequencing, sequence analysis, and preliminary biological characterization of selected viral strains. AIDS Res Hum Retroviruses 1994;10:1327-1343.
6. 6. Brennan CA, Lund JK, Golden A, et al.: Serologic and phylogenetic characterization of HIV-1 subtypes in Uganda. AIDS 1997; 11:1823-1832.
7. 7. Rayfield MA, Downing RG, Baggs J, et al.: A molecular epidemiologic survey of HIV in Uganda. AIDS 1998;12:521-527.
8. 7a. Hu DJ, Baggs J, Downing RG, Pieniazek D, Dorn J, Fridlund C, Biryahwaho B, Sempala SDK, Rayfield MA, Dondero TJ, and Lal RB: Similar distribution and continued predominance of HIV-1 subtypes A and D infections in Uganda. Emerg Infect Dis (submitted).
9. 8. Renjifo B, Chaplin D, Mwakagile D, et al.: Epidemic expansion of HIV type 1 subtype C and recombinant genotypes in Tanzania. AIDS Res Hum Retroviruses 1998;14:635-638.
10. 9. Yang C, Pieniazek D, Owen SM, et al.: Detection of phylogenetically diverse human immunodeficiency virus type 1 groups M and O from plasma using highly sensitive and specific generic primers. J Clin Microbiol 1999;37:2581-2586.
11. 10. Pieniazek D, Yang C, and Lal RB: Phylogenetic analysis of gp41 envelope of HIV-1 group M, N, and O strains provides an alternate region for subtype determination. In: Human Retrovirus and AIDS (Korber B, Hahn BH, Foley B, et al., eds.). Los Alamos National Laboratory, Los Alamos, New Mexico, 1998, pp. III112-III117.
12. 11. Felsenstein J: PHYLIP - phylogeny interference package (version 3.2). Cladistics 1989;5:164-166.
13. 12. Dorn J, Masciotra S, Yang C, et al.: Analysis of genetic variability within the immunodominant epitopes of envelope gp41 from HIV-1 group M and its impact on HIV-1 antibody detection. J Clin Microbiol 2000;38:773-780.
14. 13. Lole KS, Bollinger RC, Paranjape RS, et al.: Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with intersubtype recombination. J Virol 1999;73:152-160.
15. 14. Hunter E: gp41, a multifunctional protein involved in HIV entry and pathogenesis. In: Human Retrovirus and AIDS (Korber B, Hahn BH, Foley B, et al., eds.). Los Alamos National Laboratory, Los Alamos, New Mexico, 1997, pp. III55-III73.
16. 15. Rowland-Jones S, Tan R, and McMichael A: Role of cellular immunity in protection against HIV infection. Adv Immunol 1997;65: 277-346.
17. 16. Poignard P, Klasse PJ, and Sattentan QJ: Antibody neutralization of HIV-1. Immunol Today 1996;17:239-246.