Five different genes, Eif4a1, Cd68, Supl15h, Sox15 and Fxr2h, are clustered in a 40 kb region of mouse chromosome 11

Gene

Volumn 237, Issue 1, 1999, Pages 53-60

  Miyashita, Akinori ^a   Shimizu, Nobuko ^a   Endo, Naoya ^a   Hanyuu, Takako ^a   Ishii, Naoya ^a   Ito, Kazuhisa ^a   Itoh, Yasuhiro ^a   Shirai, Manabu ^a   Nakajima, Tamio ^a   Odani, Shoji ^a   Kuwano, Ryozo ^a  

^a NIIGATA UNIVERSITY   (Japan)

Author keywords

ES cells; Gene cluster; Gene trap; Human chromosome 17; Overlap gene

Indexed keywords

ANIMAL CELL; ARTICLE; CELL LINE; CHROMOSOME 11; CHROMOSOME 17; EMBRYO DEVELOPMENT; GENE CLUSTER; GENE FUSION; GENE MAPPING; GENE TRANSFER; GENETIC ANALYSIS; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; STEM CELL; TECHNIQUE;

ANIMALS; ANTIGENS, CD; ANTIGENS, DIFFERENTIATION, MYELOMONOCYTIC; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES; CHROMOSOMES, HUMAN, PAIR 17; DNA TRANSPOSABLE ELEMENTS; EUKARYOTIC INITIATION FACTOR-4A; FETAL DEATH; GENETIC VECTORS; HIGH MOBILITY GROUP PROTEINS; HOMOZYGOTE; HUMANS; MICE; MICE, INBRED C57BL; MICE, INBRED STRAINS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PEPTIDE INITIATION FACTORS; REPRESSOR PROTEINS; RNA-BINDING PROTEINS; TRANSCRIPTION FACTORS;

EID: 0032817474     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00301-7     Document Type: Article

References (40)

1. Baker R.K., Haendel M.A., Swanson B.J., Shambaugh J.C., Micales B.K., Lyons G.E. In vitro preselection of gene-trapped embryonic stem cell clones for characterizing novel developmentally regulated genes in the mouse. Dev. Biol. 185:1997;201-214.
2. Campbell H.D., Fountain S., Young L.G., Claudianos C., Hoheisel J.D., Chen K.S., Lupskis J.R. Genomic structure, evolution, and expression of human FLII, a gelsolin and leucine-rich-repeat family member: overlap with LLGL. Genomics. 42:1997;46-54.
3. Carlton M.B., Colledge W.H., Evans M.J. Crouzon-like craniofacial dysmorphology in the mouse is caused by an insertional mutation at the Fgf3/Fgf4 locus. Dev. Dyn. 212:1998;242-249.
4. Capecchi M.R. Altering the genome by homologous recombination. Science. 244:1989;1288-1292.
5. Chowdhury K., Bonaldo P., Torres M., Stoykova A., Gruss P. Evidence of stochastic integration of gene trap vector into the mouse germline. Nucleic Acids Res. 25:1997;1531-1536.
6. Couldrey C., Carlton M.B., Ferrier J., Colledge W.H., Evans M.J. Disruption of murine alpha-enolase by a retroviral gene trap results in early embryonic lethality. Dev. Dyn. 212:1998;284-292.
7. Friedrich G., Soriano P. Promoter traps in embryonic stem cells: a genetic screen to identify and mutate developmental genes in mice. Genes Dev. 5:1991;1513-1523.
8. Gossler A., Joyner A.L., Rossant J., Skarnes W.C. Mouse embryonic stem cells and reporter constructs to detect developmentally regulated genes. Science. 244:1989;463-465.
9. Habets G.G., Scholtes E.H., Zuydgeest D., van der Kammen R.A., Stam J.C., Berns A., Collard J.G. Identification of an invasion-inducing gene, Tiam-1, that encodes a protein with homology to GDP-GTP exchangers for Rho-like proteins. Cell. 77:1994;537-549.
10. Hiraoka Y., Ogawa M., Sakai Y., Taniguchi K., Fujii T., Umezawa A., Hata J., Aiso S. Isolation and expression of a human SRY-related cDNA hSOX20. Biochim. Biophys. Acta. 1396:1998;132-137.
11. Holness C.L., da Silva R.P., Fawcett J., Gordon S., Simmons D.L. Macrosialin, a mouse macrophage-restricted glycoprotein, is a member of the lamp/lgp family. J. Biol. Chem. 268:1993;9661-9666.
12. Ito K., Ishii N., Miyashita A., Tominaga K., Kuriyama H., Maruyama H., Shirai M., Naito M., Arakawa M., Kuwano R. Molecular cloning of a novel 130-kDa cytoplasmic protein, ankhzn, containing ankyrin repeats hooked to a zinc finger motif. Biochem. Biophys. Res. Commun. 257:1999;206-213.
13. Jiang Z., Shih D.M., Xia Y.R., Lusis A.J., de Beer F.C., de Villiers W.J., van der Westhuyzen D.R., de Beer M.C. Structure, organization, and chromosomal mapping of the gene encoding macrosialin, a macrophage-restricted protein. Genomics. 50:1998;199-205.
14. Jones E., Quinn C.M., See C.G., Montgomery D.S., Ford M.J., Kolble K., Gordon S., Greaves D.R. The linked human elongation initiation factor 4A1 (EIF4A1) and CD68 genes map to chromosome 17p13. Genomics. 53:1998;248-250.
15. Joseph D.R. The rat androgen-binding protein (ABP/SHBG) gene contains triplet repeats similar to unstable triplets: evidence that the ABP/SHBG and the fragile X-related 2 genes overlap. Steroids. 63:1998;2-4.
16. Joseph D.R., Adamson M.C., Kozak C.A. Genetic mapping of the gene for androgen-binding protein/sex hormone-binding globulin to mouse chromosome 11. Cytogenet. Cell Genet. 56:1991;122-124.
17. Kerr W.G., Heller M., Herzenberg L.A. Analysis of lipopolysaccharide-response genes in B-lineage cells demonstrates that they can have differentiation stage-restricted expression and contain SH2 domains. Proc. Natl. Acad. Sci. USA. 93:1996;3947-3952.
18. Korn R., Schoor M., Neuhaus H., Henseling U., Soininen R., Zachgo J., Gossler A. Enhancer trap integrations in mouse embryonic stem cells give rise to staining patterns in chimaeric embryos with a high frequency and detect endogenous genes. Mech. Dev. 39:1992;95-109.
19. Li A.C., Guidez F.R., Collier J.G., Glass K. The macrosialin promoter directs high levels of transcriptional activity in macrophages dependent on combinatorial interactions between PU.1 and c-Jun. J. Biol. Chem. 273:1998;5389-5399.
20. Mao M., Fu G., Wu J.S., Zhang Q.H., Zhou J., Kan L.X., Huang Q.H., He K.L., Gu B.W., Han Z.G., Shen Y., Gu J., Yu Y.P., Xu S.H., Wang Y.X., Chen S.J., Chen Z. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. Proc. Natl. Acad. Sci. USA. 95:1998;8175-8180.
21. McLauchlan J., Gaffney D., Whitton J.L., Clements J.B. The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3′ termini. Nucleic Acids Res. 13:1985;1347-1368.
22. Meyer J., Wirth J., Held M., Schempp W., Scherer G. SOX20, a new member of the SOX gene family, is located on chromosome 17p13. Cytogenet. Cell Genet. 72:1996;246-249.
23. Nielsen P.J., McMaster G.K., Trachsel H. Cloning of eukaryotic protein synthesis initiation factor genes: isolation and characterization of cDNA clones encoding factor eIF-4A. Nucleic Acids Res. 13:1985;6867-6880.
24. Nielsen P.J., Trachsel H. The mouse protein synthesis initiation factor 4A gene family includes two related functional genes which are differentially expressed. EMBO J. 7:1988;2097-2105.
25. Nielsen P.J., Rochelle J.M., Seldin M.F. The functional genes for protein synthesis initiation factor 4AI and 4AII map to mouse chromosomes 11 and 16. Mamm. Genome. 4:1993;185-186.
26. Niwa H., Araki K., Kimura S., Taniguchi S., Wakasugi S., Yamamura K. An efficient gene-trap method using poly A trap vectors and characterization of gene-trap events. J. Biochem. 113:1993;343-349.
27. Reddy N.S., Roth W.W., Bragg P.W., Wahba A.J. Isolation and mapping of a gene for protein synthesis initiation factor 4A and its expression during differentiation of murine erythroleukemia cells. Gene. 70:1988;231-243.
28. Shirai M., Miyashita A., Ishii N., Itoh Y., Satokata I., Watanabe Y.G., Kuwano R. A gene trap strategy for identifying the gene expressed in the embryonic nervous system. Zool. Sci. 13:1996;277-283.
29. Siomi M.C., Siomi H., Sauer W.H., Srinivasan S., Nussbaum R.L., Dreyfuss G. FXR1, an autosomal homolog of the fragile X mental retardation gene. EMBO J. 14:1995;2401-2408.
30. Skarnes W.C., Auerbach B.A., Joyner A.L. A gene trap approach in mouse embryonic stem cells: the lacZ reported is activated by splicing, reflects endogenous gene expression, and is mutagenic in mice. Genes Dev. 6:1992;903-918.
31. Skarnes W.C., Moss J.E., Hurtley S.M., Beddington R.S. Capturing genes encoding membrane and secreted proteins important for mouse development. Proc. Natl. Acad. Sci. USA. 92:1995;6592-6596.
32. Svaren J., Apel E.D., Simburger K.S., Jenkins N.A., Gilbert D.J., Copeland N.A., Milbrand J. The Nab2 and Stat6 genes share a common transcription termination region. Genomics. 41:1997;33-39.
33. Takeuchi T., Yamazaki Y., Katoh-Fukui Y., Tsuchiya R., Kondo S., Motoyama J., Higashinakagawa T. Gene trap capture of a novel mouse gene, jumonji, required for neural tube formation. Genes Dev. 9:1995;1211-1222.
34. van de Wetering M., Clevers H. Sox 15, a novel member of the murine Sox family of HMG box transcription factors. Nucleic. Acids Res. 21:1993;1669.
35. Voss A.K., Thomas T., Gruss P. Efficiency assessment of the gene trap approach. Dev. Dyn. 212:1998;171-180.
36. Vujic M., Rajic T., Goodfellow P.N., Stevanovic M. cDNA characterization and high resolution mapping of the human SOX20 gene. Mamm. Genome. 9:1998;1059-1061.
37. Ware F.E., Lehrman M.A. Expression cloning of a novel suppresser of the Lec15 and Lec35 glycosylation mutations of Chinese hamster ovary cells. J. Biol. Chem. 271:1996;13935-13938.
38. Ware F.E., Lehrman M.A. Addition and corrections to expression cloning of a novel suppressor of the Lec15 and Lec35 glycosylation mutations of Chinese hamster ovary cells. J. Biol. Chem. 273:1998;13366.
39. Zambrowicz B.P., Imamoto A., Fiering S., Herzenberg L.A., Kerr W.G., Soriano P. Disruption of overlapping transcripts in the ROSA beta geo 26 gene trap strain leads to widespread expression of beta-galactosidase in mouse embryos and hematopoietic cells. Proc. Natl. Acad. Sci. USA. 94:1997;3789-3794.
40. Zhang Y., O'Connor J.P., Siomi M.C., Srinivasan S., Dutra A., Nussbaum R.L., Dreyfuss G. The fragile X mental retardation syndrome protein interacts with novel homologs FXR1 and FXR2. EMBO J. 14:1995;5358-5366.