A new crystal form for the dodecamer C-G-C-G-A-A-T-T-C-G-C-G: Symmetry effects on sequence-dependent DNA structure

Journal of Molecular Biology

Volumn 300, Issue 3, 2000, Pages 551-561

  Johansson, E ^a   Parkinson, G ^a   Neidle, S ^a  

^a INSTITUTE OF CANCER RESEARCH   (United Kingdom)

Author keywords

Base morphology; Crystal packing; Dodecanucleotide; Structure; Symmetry

Indexed keywords

ALKALI METAL; PALINDROMIC DNA;

ARTICLE; BASE PAIRING; CRYSTAL STRUCTURE; CRYSTALLIZATION; DNA SEQUENCE; DNA STRUCTURE; HYDRATION; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 0034647435     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3907     Document Type: Article

References (23)

1. Crystal studies of B-DNA: The answers and the questions
2. Crystallographic R-factor refinement by molecular dynamics
3. The structure of B-DNA in oriented fibers
4. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G
5. The tyranny of the lattice
6. Structure of a B-DNA dodecamer. 3. Geometry of hydration
7. Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: Conformation and hydration
8. Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation
9. Sequence-dependent structural variation in B-DNA
10. Localization of ammonium lone in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending
11. Probing the role of structural water in a duplex oligodeoxyribonucleotide containing a water-mimicking base analog
12. Defining the structure of irregular nucleic acids-conventions and principles
13. 2+ ions
14. The structure of the most studied DNA fragment changes under the influence of ions: A new packing of d(CGCGAATTCGCG)
15. The B-DNA dodecamer at high resolution reveals a spine of water on sodium
16. Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations
17. Water and ions in a high resolution structure of B-DNA
18. The Dickerson-Drew B-DNA dodecamer revisited at atomic resolution
19. A hydrat-ion spine in a B-DNA minor groove
20. B-DNA at atomic resolution reveals extended hydration patterns
21. Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: Fractional occupancy of electronegative pockets