Mass spectrometry and proteomics

Physiological Genomics

Volumn 2000, Issue 2, 2000, Pages 59-65

  Patterson, Scott D ^a  

^a AMGEN INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; MESSENGER RNA; PROTEIN; PROTEOME;

ALGORITHM; ANIMAL; BIOLOGY; CEREBROSPINAL FLUID; CHEMISTRY; CONFERENCE PAPER; DRUG DESIGN; ELECTROSPRAY MASS SPECTROMETRY; FACTUAL DATABASE; HUMAN; HUMAN GENOME PROJECT; INFORMATION PROCESSING; INSTRUMENTATION; MASS FRAGMENTOGRAPHY; MASS SPECTROMETRY; METHODOLOGY; MOUSE; NUCLEAR PORE; SERODIAGNOSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ALGORITHMS; ANIMALS; AUTOMATIC DATA PROCESSING; BIOLOGICAL MARKERS; CEREBROSPINAL FLUID; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DRUG DESIGN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; HUMAN GENOME PROJECT; HUMANS; MASS SPECTROMETRY; MICE; NUCLEAR PORE; PRECIPITIN TESTS; PROTEINS; PROTEOME; RNA, MESSENGER; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 0034642730     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: 10.1152/physiolgenomics.2000.2.2.59     Document Type: Article

References (19)

1. Carr SA and Annan RS. Overview of peptide and protein analysis by mass spectrometry. In: Current Protocols in Molecular Biology, edited by Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, and Struhl K. New York: Wiley, 1997, p. 10.21.1-10.21.27.
2. Dancik V, Addona TA, Clauser KR, Vath JE, and Pevzner PA. De novo peptide sequencing via tandem mass spectrometry. J Comput Biol 6: 327-342, 1999.
3. Eng JK, McCormack AL, and Yates JR, III. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5: 976-989, 1994.
4. Eriksson J, Chait BT, and Fenyo D. A statistical basis for testing the significance of mass spectrometric protein identification results. Anal Chem In press.
5. Gottschalk A, Neubauer G, Banroques J, Mann M, Luhrmann R, and Fabrizio P. Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J 18: 4535-4548, 1999.
6. Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, and Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 17: 994-999, 1999.
7. Link AJ, Eng J, Schieltz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, and Yates JR, III. Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 17: 676-682, 1999.
8. Mintz PJ, Patterson SD, Neuwald AF, Spahr CS, and Spector DL. Purification and biochemical characterization of interchromatin granule clusters. EMBO J 18: 4308-4320, 1999.
9. Morris HR, Paxton T, Langhorne J, Berg M, Bordoli RS, Hoyes J, and Bateman RH. High sensitivity collisionally-activated decomposition tandem mass flight mass spectrometer. Rapid Commun Mass Spectrom 10: 889-896, 1996.
10. Morris HR, Paxton T, Panico M, McDowell R, and Dell-A. A novel geometry mass spectrometer, the Q-TOF, for low femtomole/ attomole-range biopolymer sequencing. J Protein Chem 16: 469-479, 1997.
11. Patterson SD. Protein identification and characterization by mass spectrometry. In: Current Protocols in Molecular Biology, edited by Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, and Struhl K. New York: Wiley, 1998, p. 10.22.1-10.22.24.
12. Patterson SD and Aebersold R. Mass spectrometric approaches for the identification of gel-separated proteins. Electrophoresis 16: 1791-1814, 1995.
13. Patterson SD, Spahr CS, Daugas E, Susin SA, Irinopoulou T, Koehler C, and Kroemer G. Mass spectrometric identification of proteins released from mitochondria undergoing permeability transition. Cell Death Differ In press.
14. Qiu YC, Benet LZ, and Burlingame AL. Identification of the hepatic protein targets of reactive metabolites of acetaminophen in vivo in mice using two-dimensional gel electrophoresis and mass spectrometry. J Biol Chem 273: 17940-17953, 1998.
15. Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, and Seraphin B. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032, 1999.
16. Vogl T, Roth J, Sorg C, Hillenkamp F, and Strupat K. Calcium-induced noncovalently linked tetramers of MRP8 and MRP14 detected by ultraviolet matrix-assisted laser desorption/ ionization mass spectrometry. J Am Soc Mass Spectrom 10: 1124-1130, 1999.
17. Wilkins MR, Sanchez J-C, Gooley AA, Appel RD, Humphery-Smith I, Hochstrasser DF, and Williams KL. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev 13:19-50, 1995.
18. Wilm M, Neubauer G, and Bachi A. Automatic de novo sequencing of proteins by differential scanning with a quadrupole time of flight instrument. Proc 47th ASMS Conf Mass Spectrom Allied Topics Dallas June 13-17 1999, p. 1541.
19. Wilm MS and Mann M. Electrospray and Taylor-Cone theory, Dole's beam of macromolecules at last? Int J Mass Spectrom Ion Processes 136: 167-180, 1994.