The skeletal muscle α-actin gene of channel catfish (Ictalurus punctatus) and its association with piscine specific SINE elements

Gene

Volumn 252, Issue 1-2, 2000, Pages 173-181

  Kim, Soonhag ^a   Karsi, Attila ^a   Dunham, Rex A ^a   Liu, Zhanjiang ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

Actin; Catfish; Cloning; Mermaid; Merman; Muscle; Promoter; SINE

Indexed keywords

ALPHA ACTIN; CHLORAMPHENICOL ACETYLTRANSFERASE;

ARTICLE; CATFISH; DNA SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SHORT INTERSPERSED REPEAT; SKELETAL MUSCLE; ZEBRA FISH;

ACTINS; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CELL LINE; CHLORAMPHENICOL O-ACETYLTRANSFERASE; DNA; EXONS; GENES; ICTALURIDAE; INTRONS; MOLECULAR SEQUENCE DATA; MUSCLE, SKELETAL; PROMOTER REGIONS (GENETICS); RECOMBINANT FUSION PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEQUENCE HOMOLOGY, NUCLEIC ACID; SHORT INTERSPERSED NUCLEOTIDE ELEMENTS;

ANIMALIA; DANIO RERIO; FELIS CATUS; ICTALURUS PUNCTATUS; PISCES; VERTEBRATA;

EID: 0034636702     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00198-0     Document Type: Article

References (35)

1. Blank R.S., McQuinn T.C., Yin K.C., Thompson M.M., Takeyasu K., Schwartz R.J., Owens G.K. Elements of the smooth muscle α-actin promoter required in cis for transcriptional activation in smooth muscle. Evidence for cell type-specific regulation. J. Biol. Chem. 267:1992;984-989.
2. Boeddrich A., Burgtorf C., Crollius H.R., Hennig S., Bernot A., Clark M., Reinhardt R., Lehrach H., Francis F. Analysis of the spermine synthase gene region in Fugu rubripes, Tetraodon fluviatilis, and Danio rerio. Genomics. 57:1999;164-168.
3. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:1976;248-254.
4. Charlesworth B., Sniegowski P., Stephan W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature. 37:1994;1215-1220.
5. Chow K.L., Hogan M.E., Schwartz R.J. Phased cis-acting promoter elements interact at short distances to direct avian skeletal α-actin gene transcription. Proc. Natl. Acad. Sci. USA. 88:1991;1301-1305.
6. Dantuma N.P., Potters M., De Winther M.P., Tensen C.P., Kooiman F.P., Bogerd J., Van der Horst D.J. An insect homolog of the vertebrate very low density lipoprotein receptor mediates endocytosis of lipophorins. J. Lipid Res. 40:1999;973-978.
7. Glasgow E., Karavanov A.A., Dawid I.B. Neuronal and neuroendocrine expression of lim3, a LIM class homeobox gene, is altered in mutant zebrafish with axial signaling defects. Dev. Biol. 192:1997;405-419.
8. Gorman C.M., Moffat L.F., Howard B.H. Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells. Mol. Cell. Biol. 2:1982;1044-1051.
9. Hautmann M.B., Madsen C.S., Mack C.P., Owens G.K. Substitution of the degenerate smooth muscle (SM) α-actin CC(A/T-rich)6GG elements with c-fos serum response elements results in increased basal expression but relaxed SM cell specificity and reduced angiotensin II inducibility. J. Biol. Chem. 273:1998;8398-8406.
10. Higashijima S., Nose A., Eguchi G., Hotta Y., Okamoto H. Mindin/F-spondin family: novel ECM proteins expressed in the zebrafish embryonic axis. Dev. Biol. 192:1997;211-227.
11. Higashijima S., Okamoto H., Ueno N., Hotta Y., Eguchi G. High-frequency generation of transgenic zebrafish which reliably express GFP in whole muscles or the whole body by using promoters of zebrafish origin. Dev. Biol. 192:1997;289-299.
12. Hikosaka A., Kusakabe T., Satoh N. Short upstream sequences associated with the muscle-specific expression of an actin gene in ascidian embryos. Dev. Biol. 166:1994;763-769.
13. Hwang S.P., Tsou M.F., Lin Y.C., Liu C.H. The zebrafish BMP4 gene: sequence analysis and expression pattern during embryonic development. DNA Cell Biol. 16:1997;1003-1011.
14. Izsvak Z., Ivics Z., Garcia-Estefania D., Fahrenkrug S.C., Hackett P.B. DANA elements: a family of composite, tRNA-derived short interspersed DNA elements associated with mutational activities in zebrafish (Danio rerio). Proc. Natl. Acad. Sci. USA. 93:1996;1077-1081.
15. Liu Z., Zhu Z., Roberg K., Faras A., Guise K., Kapuscinski A., Hackett P.B. The β-actin gene of carp (Ctenopharyngodon idella). Nucleic Acids Res. 7:1989;5850.
16. Liu Z.J., Moav B., Faras A.J., Guise K.S., Kapuscinski A.R., Hackett P.B. Development of expression vectors for transgenic fish. Biotechnology. 8:1990;1268-1272.
17. Liu Z.J., Moav B., Faras A.J., Guise K.S., Kapuscinski A.R., Hackett P.B. Functional analysis of elements affecting expression of the β-actin gene of carp. Mol. Cell. Biol. 10:1990;3432-3440.
18. Liu Z., Zhu Z., Roberg K., Faras A., Guise K., Kapuscinski A., Hackett P.B. Isolation and characterization of β-actin gene of carp (Cyprinus carpio). DNA Seq. 1:1990;125-136.
19. Liu Z., Li P., Dunham R.A. Characterization of an A/T-rich family of sequences from channel catfish (Ictalurus punctatus). Mol. Marine Biol. Biotechnol. 7:1998;232-239.
20. Liu Z.J., Li P., Kucuktas H., Dunham R. Characterization of nonautonomous Tc1-like transposable elements of channel catfish (Ictalurus punctatus). Fish Physiol. Biochem. 21:1999;65-72.
21. Maulet Y., Camp S., Gibney G., Rachinsky T.L., Ekstrom T.J., Taylor P. Single gene encodes glycophospholipid-anchored and asymmetric acetylcholinesterase forms: alternative coding exons contain inverted repeat sequences. Neuron. 4:1990;289-301.
22. Ogiwara I., Miya M., Ohshima K., Okada N. Retropositional parasitism of SINEs on LINEs: identification of SINEs and LINEs in elasmobranchs. Mol. Biol. Evol. 16:1999;1238-1250.
23. Sambrook J., Frisch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. second ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
25. Shimoda N., Chevrette M., Ekker M., Kikuchi Y., Hotta Y., Okamoto H. Mermaid: a family of short interspersed repetitive elements widespread in vertebrates. Biochem. Biophys. Res. Commun. 220:1996;226-232.
26. Shimoda N., Chevrette M., Ekker M., Kikuchi Y., Hotta Y., Okamoto H. Mermaid, a family of short interspersed repetitive elements, is useful for zebrafish genome mapping. Biochem. Biophys. Res. Commun. 220:1996;233-237.
27. Sikorav J.L., Duval N., Anselmet A., Bon S., Krejci E., Legay C., Osterlund M., Reimund B., Massoulie J. Complex alternative splicing of acetylcholinesterase transcripts in Torpedo electric organ; primary structure of the precursor of the glycolipid-anchored dimeric form. EMBO J. 7:1988;2983-2993.
28. Sterrer S., Konigstorfer A., Hoffmann W. Biosynthesis and expression of ependymin homologous sequences in zebrafish brain. Neuroscience. 37:1990;277-284.
29. Takeda K., Suzuki N. Genomic structure and expression of the medaka fish homolog of the mammalian guanylyl cyclase B. J. Biochem. 126:1999;104-114.
30. Ticho B.S., Stainier D.Y., Fishman M.C., Breitbart R.E. Three zebrafish MEF2 genes delineate somitic and cardiac muscle development in wild-type and mutant embryos. Mech. Dev. 59:1996;205-218.
31. Vandekerchkove J., Weber K. At least six different actins are expressed in a higher mammal: an analysis based on the amino acid sequences of the amino-terminal tryptic peptide. J. Mol. Biol. 126:1978;783-802.
32. Vandekerchkove J., Weber K. The complete amino acid sequence of actins from bovine aorta, bovine heart, bovine fast skeletal muscle, and rabbit slow skeletal muscle: a protein-chemical analysis of muscle actin differentiation. Differentiation. 14:1979;123-133.
33. Venkatesh B., Tay B.H., Elgar G., Brenner S. Isolation, characterization and evolution of nine pufferfish (Fugu rubripes) actin genes. J. Mol. Biol. 259:1996;655-665.
34. Watabe S., Hirayama Y., Imai J., Kikuchi K., Yamashita M. Sequences of cDNA clones encoding α-actin of carp and goldfish skeletal muscles. Fish. Sci. 61:1995;998-1003.
35. Xue L., Ainsworth A.J., Hanson L., Ye Q., Noya M. Identification of a channel catfish, Ictalurus punctatus (Rafinesque), leukocyte-specific leucine zipper protein. Dev. Comp. Immunol. 23:1999;149-163.